PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35780.3.p
Common NameBRADI_4g35780, LOC100843820
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 400aa    MW: 41873.3 Da    PI: 4.8111
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35780.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35441352102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll
  Bradi4g35780.3.p  44 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLL 127
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Bradi4g35780.3.p 128 CDIHRRKV 135
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-3835128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.21E-3541133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-3244133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAEQQSAAIA AAAEGAGGEP PVPVPAALVA PADAAGQRSL PTPFLTKTYQ LVEDPAVDDV  60
ISWNEDGSTF VVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVPD RWEFANDCFR  120
RGEKRLLCDI HRRKVVQSSA GLAAAAAAAA AGAVTVATAA IPMALPVTRS GSPEPHSSEE  180
QVLSSNSGSA EERLPGPSGS GSGLGGGAGG GSSSGDLGEE NDRLRRDNTR LTRELGQMKK  240
LCNNIVLLMS KYAATQQPDG PASLSSVVNC SGESALAPPP PLPTAILDLM PSCSALATAA  300
GLAVDGEPDT SARLFGVSIG QKRSRDSDDG GGREEDPRDD GGEGADVKPE QADRRPDSQE  360
RSPDGPDQHS WPIYRPKPVY RACNGPDGAG SDQDRSNSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-263413320129Heat shock factor protein 1
5d5v_B2e-263413320129Heat shock factor protein 1
5d5v_D2e-263413320129Heat shock factor protein 1
5hdg_A2e-264413310110Heat shock factor protein 1
5hdn_A2e-264413310110Heat shock factor protein 1
5hdn_B2e-264413310110Heat shock factor protein 1
5hdn_C2e-264413310110Heat shock factor protein 1
5hdn_D2e-264413310110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201211SGLGGGAGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35780.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578478.10.0heat stress transcription factor B-2c
SwissprotQ652B01e-146HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLI1IS200.0I1IS20_BRADI; Uncharacterized protein
STRINGBRADI4G35780.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]