PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g35655.1.p | ||||||||
Common Name | BRADI_4g35655, LOC100831768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 23820.5 Da PI: 10.6151 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 21 | 69 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +grWvAeI+d +r r +lg+f+tae+Aa+a+++a+++l+g Bradi4g35655.1.p 21 FLGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEDAARAYDEAARALRG 69 67******.7*********....4456*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-27 | 20 | 77 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.30E-26 | 20 | 78 | No hit | No description |
SMART | SM00380 | 2.2E-33 | 20 | 83 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.152 | 20 | 77 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-19 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.6E-8 | 21 | 32 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.1E-13 | 23 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAAEGSGRST TATAQCRGRR FLGVRQRPSG RWVAEIKDSA QRVRLWLGTF DTAEDAARAY 60 DEAARALRGD NTRTNFAARH NGASSSPARA RVSKNLQHVM ARAAAAGRSS LATACGDQQF 120 ALAAVFRHWQ APPEQQLTPS ARGGETVQHV ANAVQPSFVV PRRTEAPPPV TLGAGDVWGA 180 DTGVLELAAG SGGETGGEKS FKVSSSLIVP SKFGAAAATE SFGLEEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 16 | 81 | 1 | 67 | ATERF1 |
3gcc_A | 1e-14 | 16 | 81 | 1 | 67 | ATERF1 |
5wx9_A | 2e-14 | 20 | 84 | 14 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g35655.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239429.1 | 1e-162 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A0Q3IYC4 | 1e-161 | A0A0Q3IYC4_BRADI; Uncharacterized protein | ||||
STRING | Si032213m | 1e-63 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-19 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g35655.1.p |
Entrez Gene | 100831768 |