PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g35620.1.p
Common NameLOC100840362
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 254aa    MW: 26846.9 Da    PI: 4.6934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g35620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184699156
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                      + y+GVr + + grWv+e+r+p   g ++kr +lg++ tae Aa+a++aa+++l+g+
  Bradi4g35620.1.p 46 PVYRGVRLRGTAGRWVCEVRVP---GmRNKRLWLGTHLTAESAARAHDAAMLALRGA 99
                      68*******************9...8888*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-124698IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1647112IPR016177DNA-binding domain
SMARTSM003805.6E-1547116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2447112IPR001471AP2/ERF domain
PROSITE profilePS5103220.23147110IPR001471AP2/ERF domain
CDDcd000188.12E-134893No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MAMDGSDQWT SSTTSSSSSH DQYMVVWSPP PKRPAGRTKF KETRHPVYRG VRLRGTAGRW  60
VCEVRVPGMR NKRLWLGTHL TAESAARAHD AAMLALRGAS AAAAGLLNFP DSAWLLSVTP  120
PALADLDGVQ RAALAAVADY QRREAANGAA AVPVVNEAVS NEFASSSDNA VSWATSQASA  180
NNGTSEEPVV MGSEMFELGM PEEMDLGMYY KDLAEGLLME PPPPPPAPNT GTGVCWESGD  240
YGDGGADAAL WSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g35620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ1804701e-143JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238395.10.0dehydration-responsive element-binding protein 1H
TrEMBLI1IRZ90.0I1IRZ9_BRADI; Uncharacterized protein
STRINGBRADI4G35620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP6456520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.14e-21C-repeat/DRE binding factor 2