PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g35600.1.p

Common Name

BRADI_4g35600, CBF4

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

ERF

Protein Properties

Length: 249aa MW: 26590.1 Da PI: 4.5006

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g35600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	45	98	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + + grWv+e+r+p ++g kr +lg++ tae Aa+a++aa+++l+g+ Bradi4g35600.1.p 45 PVYRGVRLRGNAGRWVCEVRVPGNRG--KRLWLGTHLTAESAARAHDAAMLALHGP 98 68*****************95554..************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	8.1E-13	45	97	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-24	46	111	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.376	46	109	IPR001471	AP2/ERF domain
SMART	SM00380	3.5E-17	46	111	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.16E-16	46	111	IPR016177	DNA-binding domain
CDD	cd00018	7.40E-21	47	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MAMDGYDQWI SSASSSSSHD QYGVVWSPPP KRPAGRTKFK ETRHPVYRGV RLRGNAGRWV 60 CEVRVPGNRG KRLWLGTHLT AESAARAHDA AMLALHGPSA AAACLLNFPD SAWLLAVTPP 120 ALADLDDIQR AALAAVADFQ RREAATVPVP VPVAASEITS IASMVPVNDA GSWPSFQPCV 180 AGMFDGPVVM GSDMFELDMP DEMDLGMYYA DLAEGLLMEP PLPAPDTGAC WEIGEYGDGG 240 TDATLWNY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g35600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ180470	0.0	JQ180470.1 Brachypodium distachyon CBF1 (CBF1), CBF2 (CBF2), CBF3 (CBF3), and CBF4 (CBF4) genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010238394.1	0.0	dehydration-responsive element-binding protein 1H
Swissprot	A2Z389	2e-57	DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBL	H9C1H3	0.0	H9C1H3_BRADI; CBF4
STRING	BRADI4G35600.1	1e-180	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261
Representative plant	OGRP6456	5	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	5e-28	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Phytozome	Bradi4g35600.1.p
Entrez Gene	100839759

Publications ? help Back to Top
Li C, et al. Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses. BMC Plant Biol., 2012. 12: p. 65 [PMID:22569006]