PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g35240.2.p

Common Name

BRADI_4g35240, LOC100825137

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 379aa MW: 40769.5 Da PI: 6.8547

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g35240.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.9e-11	180	238	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i eLe kv++L++e ++L +l l+ l+se+ Bradi4g35240.2.p 180 KRAKRIWANRQSAARSKERKMRYIGELEHKVQTLQTEATTLSAQLALLQRDTTGLTSEN 238 9***********************************************99998888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-17	176	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	178	241	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-9	180	238	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-11	180	235	No hit	No description
SuperFamily	SSF57959	1.83E-11	180	235	No hit	No description
CDD	cd14703	5.65E-23	181	230	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MNKDRAWISA EGGGGDGLPP QSSRRAGPSS STTPPPEYDI SRMPDFPTRN PGHRRAHSEI 60 LSLPDDLDLS APGGGDGPSL SDENDEELFS MFLDVDKLNS SCGASSEAES SSAAAGGGQA 120 AGMGHGMRPK HQHSQSMDES MSIKTEELVG AQGMEGMSSV EAKKAVSAAK LAELALVDPK 180 RAKRIWANRQ SAARSKERKM RYIGELEHKV QTLQTEATTL SAQLALLQRD TTGLTSENSE 240 LKIRLQTMEQ QVHLQDALND TLKTEVQRLK VATGQLANGG GMMMNYGGMP QAPHQFGGNQ 300 QMFHNNQTMQ SLLATHQLQQ LQLHQQPQQQ ALRPQHQQQP LHPLQAQQLQ RDLKMKGPMG 360 GGQSLWGDGK SSGGSSGI*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MNKDRAWISA EGGGGDGLPP QSSRRAGPSS STTPPPEYDI SRMPDFPTRN PGHRRAHSEI  60
LSLPDDLDLS APGGGDGPSL SDENDEELFS MFLDVDKLNS SCGASSEAES SSAAAGGGQA  120
AGMGHGMRPK HQHSQSMDES MSIKTEELVG AQGMEGMSSV EAKKAVSAAK LAELALVDPK  180
RAKRIWANRQ SAARSKERKM RYIGELEHKV QTLQTEATTL SAQLALLQRD TTGLTSENSE  240
LKIRLQTMEQ QVHLQDALND TLKTEVQRLK VATGQLANGG GMMMNYGGMP QAPHQFGGNQ  300
QMFHNNQTMQ SLLATHQLQQ LQLHQQPQQQ ALRPQHQQQP LHPLQAQQLQ RDLKMKGPMG  360
GGQSLWGDGK SSGGSSGI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g35240.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK356433	0.0	AK356433.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1034M13.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576732.1	0.0	transcription factor RF2a
Refseq	XP_014758763.1	0.0	transcription factor RF2a
Swissprot	Q69IL4	1e-157	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	I1IRV2	0.0	I1IRV2_BRADI; Uncharacterized protein
STRING	BRADI4G35240.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-55	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi4g35240.2.p
Entrez Gene	100825137

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]