PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g34550.1.p
Common NameBRADI_4g34550
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 550aa    MW: 63739 Da    PI: 7.316
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g34550.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.96e-1753137190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY+ YAk+  F v++++ ++  ++++    t+ Cs++gk++ ++k+   + +++++tr++C ak+k  ++  +k+++t++ l+HnH+ +
  Bradi4g34550.1.p  53 RFYKGYAKTKDFGVVRRTARHG-DDRKLNYFTLACSRQGKAQYSSKN---SFNPNPSTRMQCPAKVKFARR-GEKFCITSVTLDHNHPTS 137
                       5****************99998.77779***************9999...99******************9.9**************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1353137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.656365401IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5372397IPR007527Zinc finger, SWIM-type
SMARTSM005755.6E-5376403IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MESNLPSDEV ADQHNGVFHE DDEDAFILEE IGDSLDDQPK KGIMFDSEDD AIRFYKGYAK  60
TKDFGVVRRT ARHGDDRKLN YFTLACSRQG KAQYSSKNSF NPNPSTRMQC PAKVKFARRG  120
EKFCITSVTL DHNHPTSPSK SRFLRCHKKL DLHAKRMLEL NDQAGIRMNK NFGSLVMEAG  180
GYEQLEFGEK ECKNYLQEKR RLKLGAGDAH AVYQYFLRIH NKYRWVPAYV KDTFWAGMSS  240
TQRSESVNAF FDGYVNARTT LKQFVEQYEN ALRDKVEKEN KADSKSFQEV IPCITHYDFE  300
RQFQETYTNA KFKEFQEQLR GKIYCYPTQV NKEGSLFTFR VREDRKIFFE GEDGEIKDKR  360
IISEFAVLFD QGECDVQCGC RLFEFRGILC SHILSVLALM EITEVPSRYI LQRWRKDFKR  420
KHTFIKCSYD DMLNTPLVQR YDNLCKRSRE VAENGAESDA LYALVMDGLG QLQIKIDAHR  480
ASQEVQEEDQ TKKHEETMSN KEKIVLSPIP ARRVLQTNEP ATPIQINSYI DILQGKKDVL  540
DLLSATLND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g34550.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756066.20.0protein FAR1-RELATED SEQUENCE 6
TrEMBLI1IRK30.0I1IRK3_BRADI; Uncharacterized protein
STRINGBRADI4G34550.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.26e-47far-red elongated hypocotyls 3