PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g34022.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 883aa MW: 96239.5 Da PI: 4.3808 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.3 | 3.4e-45 | 9 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++k+w+f s+ d+ky++g+r++r+t++gyWkatgkd+++ Bradi4g34022.2.p 9 PPGFRFSPTDEELVLYFLKRRIASGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFCSRLDRKYPNGSRASRTTAEGYWKATGKDRTI 99 8*********************9999555..6**************94357788999************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg kktLv+++grap+g +tdWvmhey++ Bradi4g34022.2.p 100 CN-GGRAVGNKKTLVYHHGRAPRGDRTDWVMHEYTI 134 *9.9******************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-51 | 6 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.096 | 8 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-23 | 9 | 134 | IPR003441 | NAC domain |
Hamap | MF_01477 | 18.225 | 761 | 868 | IPR004394 | Protein Iojap/ribosomal silencing factor RsfS |
SuperFamily | SSF81301 | 2.78E-25 | 768 | 877 | No hit | No description |
Gene3D | G3DSA:3.30.460.10 | 5.7E-25 | 771 | 870 | No hit | No description |
Pfam | PF02410 | 9.9E-18 | 774 | 867 | No hit | No description |
TIGRFAMs | TIGR00090 | 1.2E-20 | 774 | 867 | IPR004394 | Protein Iojap/ribosomal silencing factor RsfS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence Send to blast |
MENPPPRWPP GFRFSPTDEE LVLYFLKRRI ASGRPTPYIA DVDVYKSHPS HLPERSALRT 60 GDKQWFFCSR LDRKYPNGSR ASRTTAEGYW KATGKDRTIC NGGRAVGNKK TLVYHHGRAP 120 RGDRTDWVMH EYTILGDALP PTAQGREGYA LYKLFQKSGV GPKNGEQYGA PFREEDWLDD 180 DEGELQLPVE AADPIPTTVA SDRAGTVDEQ IGDLEALLLQ TGNDQINIGP PSDLSTPVPS 240 QVLFQHGQSQ GWPTAEDNRS EVADATTSSR AMLVADNTCT ELPFGDLEGL LMEISDEQRS 300 AELFSEFSNP VPQLQLQHDD QEAWLNADME EVSVADYTTS SGVVETAECT GIELPYGDLE 360 GLLLQIENDQ ENIEPLTDFS LPVSHHECHQ VGVGDLQRCH GAMFSSVDPS SAVQGSTNFE 420 PQLEPSNQIA QSALTCMPLS WEANCTEETS VMQSVSGLAS YDGQDSHEEF LEINDFFDSE 480 DIGQSMNCTT TEHLISASSG MFDSLEYSDA SMFLPGSFDT AGVVTENQYV DFGDSGYKSQ 540 GVQYTAELWA HNQVALNMQN HMKHNHVGLS SHASGTANNI VNEEPLNRSP NTSQSWFNSA 600 LSTLLDAVPA SPALAAESNV LNRTLQRISS FRSEQVSNES SAPVIHVRRA AVTMRAAAIQ 660 SHILGRAPPV AVPLHTRPRR AGGGGGALLR RQGSQLRSDL LLLPLPTAVP CRARSPSSSS 720 SSSADSGTGE GADELLEDLL QKHGEVVYSA AGGGGAPANE ADEDAECLSL AVSLAKVASE 780 VKAADIRVLF VKPIVYWTEF FIILTAFSNA QIEAISSKMR DIGEQQFSRV ASGDTKPNSW 840 TLLDFGDVVV HIFLPPQREF YNLEEFYGNA TPIELPFETQ LR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-41 | 9 | 134 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g34022.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578349.1 | 0.0 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A2K2CS49 | 0.0 | A0A2K2CS49_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34022.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 1e-62 | NAC domain containing protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g34022.2.p |