PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g33820.1.p | ||||||||
Common Name | BRADI_4g33820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 614aa MW: 64817 Da PI: 10.3504 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 23 | 73 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqk 46 W t E++ll++av ++G+ +W+++a +++ ++t+ +c++r++ Bradi4g33820.1.p 23 WGTLEELLLACAVSRHGTASWDSVATEVQtrsplaarPRLTARSCRLRFHH 73 9999*********************************99********9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0011 | 19 | 77 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-4 | 23 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-8 | 23 | 72 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.191 | 23 | 75 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.10E-4 | 23 | 74 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 3.5E-7 | 211 | 312 | IPR001487 | Bromodomain |
SMART | SM00297 | 0.002 | 227 | 339 | IPR001487 | Bromodomain |
CDD | cd04369 | 9.23E-8 | 242 | 307 | No hit | No description |
PROSITE profile | PS50014 | 9.007 | 245 | 307 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 9.68E-9 | 248 | 318 | IPR001487 | Bromodomain |
Pfam | PF00439 | 5.4E-7 | 250 | 317 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MADGSDGTDV SPEAAAAPAG EIWGTLEELL LACAVSRHGT ASWDSVATEV QTRSPLAARP 60 RLTARSCRLR FHHLHRRFSV AGAEVAGAEG EGEDPDASAA DGWLDELRRL RVAELRREVE 120 RCDLSIGTLQ AKVEQMKEER ERSLSGEAKK EEVTGEDNLS GEEAGRSCRE SNSTDLKRPK 180 NSGDQSGVKE DDATAKLEEF SGESMAASKE SSASQRRRRK ASAGDEESEE ASVQSQPLAA 240 LLDRVAARFG SVFERLQETQ ESESYRGTVR RHVDLETMRR KLDGPAAYTS SEFYRDLLLL 300 CANAAVYLPR HGTAEHAAAA VNALRLVSAQ VSATLREPKR DLQIGKSVAA ASGNNNNNLP 360 SAAADSRRAE AGGADVVGPL IEKTSKPLIF CRKRSSIAKA SAAAAAVARK EEEDAAKVEA 420 DKEEGSDGEK KAVAAVAATK DKAWGTRAKK TRGPNKNAGA AALSRKASKA AAAAEEAETK 480 ADKKKGDADS DGATAAGGLV AKKRNAVDFL KRLNQGASSS TKKKRGSPLV GRKRSAAAEA 540 QEEEQPKARR GPGKKGTGRG GSKSGAKAAG TKRSVGRPPQ KRGAAPATPP PSKRAKVNRS 600 ERTSSSSRRG GRK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g33820.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188003.1 | 0.0 | uncharacterized protein LOC109773708 | ||||
TrEMBL | I1IRA6 | 0.0 | I1IRA6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G33820.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3181 | 26 | 48 | Representative plant | OGRP3805 | 11 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42150.1 | 2e-24 | DNA-binding bromodomain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g33820.1.p |