PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g33557.2.p | ||||||||
Common Name | BRADI_4g33557, LOC100828022 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 393aa MW: 42302.2 Da PI: 7.2924 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.5e-05 | 229 | 248 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Bradi4g33557.2.p 229 FSCPVCFKTFNRYNNMQMHM 248 89*****************9 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 315 | 335 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F k + ++H +++ Bradi4g33557.2.p 315 CRRCGKAFAVKGDWRTHEKNC 335 *****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.64 | 229 | 256 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.7E-6 | 229 | 248 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 231 | 251 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.04E-6 | 295 | 333 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.2E-5 | 300 | 333 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 8.538 | 313 | 333 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MENPYTTFLK NYHQQTHRRP RYYNCPATPT PSPAPPPPLS AYSSLFFPPP PGPPPAAPAP 60 PSPPLREALP LLSLAPAASS HVSRERRPGP DSDDDEADED EAPGPTSSSS NQRREGARRL 120 FADLNSKAAD DDDDPMDVER GGSMAAEGPN VTVALRIGLP SAAAADLISG ISSSAAAATA 180 SSRDEEEEEE DGGGVAAALG FASAAIGRLN KGQYWIPTPT QILIGPTQFS CPVCFKTFNR 240 YNNMQMHMWG HGSQYRKGPE SLRGIQPTAM LRLPCYCCAP GCRNNVDHPR AKPLKDFRTL 300 QTHYKRKHGL KPFLCRRCGK AFAVKGDWRT HEKNCGKLWY CLCGSEFKHK RSLKDHARAF 360 GRGHGAIGGG GLDDDDDCGA VSDVDHDDGA GV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g33557.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK356814 | 0.0 | AK356814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1040D10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576670.1 | 0.0 | zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-121 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A0Q3HR76 | 0.0 | A0A0Q3HR76_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G33557.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP586 | 38 | 170 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-104 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g33557.2.p |
Entrez Gene | 100828022 |
Publications ? help Back to Top | |||
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