PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g33370.1.p
Common NameBRADI_4g33370, LOC100844123
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 691aa    MW: 74437.3 Da    PI: 6.4379
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g33370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY924.5e-29286342259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynW+KYG K+vk++e+prsY++Ct+++Cpvkkkvers+  ++++ei+Y+g+Hnh+
  Bradi4g33370.1.p 286 EDGYNWKKYGPKQVKSTEYPRSYFKCTHPNCPVKKKVERSQ-VGQITEIIYKGTHNHP 342
                       7***************************************9.9**************7 PP
2WRKY104.84.7e-33504562159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe
  Bradi4g33370.1.p 504 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHPGCSVRKHVERASHDLKSVITTYEGKHNHE 562
                       59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-25278344IPR003657WRKY domain
SuperFamilySSF1182904.71E-23283344IPR003657WRKY domain
SMARTSM007744.0E-30285343IPR003657WRKY domain
PfamPF031061.0E-22286342IPR003657WRKY domain
PROSITE profilePS5081120.667286344IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37489564IPR003657WRKY domain
SuperFamilySSF1182907.32E-29496564IPR003657WRKY domain
PROSITE profilePS5081137.539499564IPR003657WRKY domain
SMARTSM007744.0E-38504563IPR003657WRKY domain
PfamPF031062.8E-25505562IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MAGTSDRGSI MEDWMAMPPT PSPRTLMSSF LNEDFSSGPF SNLFSENGSN KPHDHSEKRG  60
EFVDLRDQVP AQSAEATLQK DISLEPNLFN ANQKPNPHGG LAERMASRAG FSIPKIDTSR  120
VGSSTVIRSP IAIPPGLSPT TLLESPVFLY NSMAQPSPTT GKLPFPATNA NSTIPPAARM  180
NEDHTFSNDV FSFQPHLGSK APSLSTVEKG YNACPSNQSL SNIHQRESNL QSSFTAVKDT  240
ADETIIKPKT SDSMFGDDHS SSEEQEDDET DQNGEYSSAT ISTPDEDGYN WKKYGPKQVK  300
STEYPRSYFK CTHPNCPVKK KVERSQVGQI TEIIYKGTHN HPLPPLNPHS GVPLSHISDP  360
QVNARKNPGL QAGLDSASLW ENGRSGCIQD VQSEGVDARP GTRLPVSAYG DTSIVESQDA  420
VDVSSTLSNE EIDRATHGTV SLDCDGGEDE TESKRRKLDA LATATVTAAA ATSTTSTIDM  480
VAAASRSVRE PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC THPGCSVRKH  540
VERASHDLKS VITTYEGKHN HEVPAARNSG HASSGSGSAP ASMPQVNLSH RRQEQAQGSF  600
GQFGGSTPFG SFGLPPRGQL GAAGNFRFGM VPPGMSIPMP AAHQQSMMQG YPGLMMPEGQ  660
PKTEPGPQSE HAASSAYQQM MSRPPFGSQM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37286565878Probable WRKY transcription factor 4
2lex_A5e-37286565878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g33370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238285.10.0probable WRKY transcription factor 2
TrEMBLI1IR530.0I1IR53_BRADI; Uncharacterized protein
STRINGBRADI4G33370.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-113WRKY DNA-binding protein 2