PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32934.1.p
Common NameBRADI_4g32934, LOC100836200
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 416aa    MW: 43657.6 Da    PI: 6.6507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32934.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-09250298355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Bradi4g32934.1.p 250 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 298
                       58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-17245315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.73E-11245302No hitNo description
PROSITE profilePS5088815.65247297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16248314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-7250298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11253303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNESSEKGME GNGSSGPGNG IPPVEWQNQF AGGFSAQQQQ QHTHMMDSFA AAASGMWAAP  60
SQNMSALSDV SGMSRGHGPG FLGPVPGAFL PPSCLGGHFP VDSGFIERAA RSSCFAGPGA  120
FGGGGDQHMG SAFGGVSEGY LDHRSSDKAE PEIAGNQGVP SSEAAGGDCS SKGSDSKKRR  180
RPSEVMGADQ VQSSNVAADS ANESVHSKDK GEESSPATTT TGKSKGKGAK ESSEKEDYIH  240
VRARRGQATN SHSLAERLRR EKISERMKLL QDLVPGCSKV TGKAVMLDEI INYVQSLQRQ  300
VEFLSMKLAT VNPRLDLNIE GLLSKDLLRF PGVSSSSIGF SPEMMHPQLQ LSQPGLMQGG  360
AAGMANQDVF RRIMQAQLGA KDGSQMPHAL NGSFSDHVAQ MAYPSMGSSQ DGFQM*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32934.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627780.0AK362778.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578282.10.0transcription factor bHLH49
RefseqXP_010238258.10.0transcription factor bHLH49
SwissprotQ9CAA95e-70BH049_ARATH; Transcription factor bHLH49
TrEMBLI1IR010.0I1IR01_BRADI; Uncharacterized protein
STRINGBRADI4G32934.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.22e-59bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]