PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g32737.1.p | ||||||||
Common Name | BRADI_4g32737, LOC100839857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 27304.2 Da PI: 4.3442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.4 | 2.9e-19 | 36 | 89 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k Bradi4g32737.1.p 36 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 89 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 133.6 | 7.1e-43 | 35 | 127 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++++L +e+ke Bradi4g32737.1.p 35 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRLDHDALRRDKDALLAEIKE 127 69**************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.475 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-18 | 34 | 95 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.27E-20 | 35 | 103 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-16 | 36 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.85E-19 | 36 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 37 | 98 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-6 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-6 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.6E-17 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MANPNDMDYG VVGMETEGDA EEEMMACGGG GGGGEKKRRL SAEQVRALER SFEVENKLEP 60 ERKARLARDL GLQPRQVAVW FQNRRARWKT KQLERDYNAL RHSYDALRLD HDALRRDKDA 120 LLAEIKELKG KLGDEDAAAS FTSVKEEPAA SDGPPPAGMG YSDSDSSAVV NDTDATGATP 180 PAELPAPEVG TLLVAPCAAA AGHGEVFFHG NFLKVEEDET GFLDDDEPCG GFFADEPPLA 240 WWTDPTEHWK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 66 | ERKARLA |
2 | 83 | 91 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. | |||||
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g32737.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. | |||||
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354063 | 0.0 | AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21. | |||
GenBank | AK355887 | 0.0 | AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238252.1 | 0.0 | homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q6K498 | 1e-124 | HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4 | ||||
Swissprot | Q9XH37 | 1e-124 | HOX4_ORYSI; Homeobox-leucine zipper protein HOX4 | ||||
TrEMBL | I1IQY0 | 0.0 | I1IQY0_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G32737.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-53 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g32737.1.p |
Entrez Gene | 100839857 |
Publications ? help Back to Top | |||
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