PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g32130.1.p
Common NameBRADI_4g32130, LOC100845639
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 303aa    MW: 32790.2 Da    PI: 10.4632
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g32130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32.1e-32291202102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+++++e++ ++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++ll
  Bradi4g32130.1.p  29 FLTKTHQMVEERGTDEVISWGEEGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQSLL 112
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       + i+r+k 
  Bradi4g32130.1.p 113 SGIRRRKA 120
                       *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3522112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-5325118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3225118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-172952IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2829118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-178092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAGAAAAQQK RGGGGRGSAG SGGGGPAPFL TKTHQMVEER GTDEVISWGE EGRSFVVWKP  60
VELARDLLPL HFKHCNFSSF VRQLNTYGFR KVVPDRWEFA NENFRRGEQS LLSGIRRRKA  120
AATTTTPQSS KSCGSGGGVN VAFPPPLPHT LPPASASTSG NDHSSSSGAS SPSRHPDLAS  180
DNQRLRKANH TLALELALAR RRCEELLGFL SRFLDVRQLD LRLLMHDEDM MQGAVARERC  240
QERQAGCEEK TVKLFGVLLK DAPARKRARC DEAAASERAS IKMIRMGEPW VGVPVPPAGP  300
AR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-201311810129Heat shock factor protein 1
5d5v_B4e-201311810129Heat shock factor protein 1
5d5v_D4e-201311810129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g32130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578229.10.0heat stress transcription factor B-1
SwissprotQ67TP91e-119HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLI1IQQ90.0I1IQQ9_BRADI; Uncharacterized protein
STRINGBRADI4G32130.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-43heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]