PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g31777.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 367aa MW: 43722 Da PI: 9.5656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g31777.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.9	1.1e-20	13	105	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Y+ YA++ GF +r ++++ks+ +gei + vC + g ++++kk+ +k r ++ ++rtgCka++++k++ + w vt++ e nH+l Bradi4g31777.1.p 13 YKMYARRYGFGIRYDYKRKSEVDGEISSVSIVCHRAGVQSTKKKDtwnpepVVKLRGRNITERTGCKARMMIKRR-PDGWLVTEFAYEYNHPL 104 9****************************************99999999899999**************.888***********9 PP FAR1 90 a 90 Bradi4g31777.1.p 105 I 105 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-18	13	105	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-31	183	277	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MVFDSLKAVE ERYKMYARRY GFGIRYDYKR KSEVDGEISS VSIVCHRAGV QSTKKKDTWN 60 PEPVVKLRGR NITERTGCKA RMMIKRRPDG WLVTEFAYEY NHPLIKKWSL TRYTVKNVAN 120 YRASIQMEHK YTDMEDTMDY FRKLQQQDKD FYYKYKLDEE FRVQNIFWVD GAARRAYKHY 180 NDCVSFDTTY MTNIYKMPFA PFIGINNHGQ SIQFGCGFLR NELTERFVWL FRTFLEAVDG 240 LVPINIITDQ DFAMRAGIDE VFPNTRHRNC RWHIMKKATE KLGSYLAGRK KLHAEFNDSV 300 NSSMTPDEFE EKWNTMVQKH RLEEHEDFIR LYHKRSCCVP AYFMQSFYPF LQSTARNEGF 360 NAVLKK*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MVFDSLKAVE ERYKMYARRY GFGIRYDYKR KSEVDGEISS VSIVCHRAGV QSTKKKDTWN  60
PEPVVKLRGR NITERTGCKA RMMIKRRPDG WLVTEFAYEY NHPLIKKWSL TRYTVKNVAN  120
YRASIQMEHK YTDMEDTMDY FRKLQQQDKD FYYKYKLDEE FRVQNIFWVD GAARRAYKHY  180
NDCVSFDTTY MTNIYKMPFA PFIGINNHGQ SIQFGCGFLR NELTERFVWL FRTFLEAVDG  240
LVPINIITDQ DFAMRAGIDE VFPNTRHRNC RWHIMKKATE KLGSYLAGRK KLHAEFNDSV  300
NSSMTPDEFE EKWNTMVQKH RLEEHEDFIR LYHKRSCCVP AYFMQSFYPF LQSTARNEGF  360
NAVLKK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g31777.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239385.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K2CRP2	0.0	A0A2K2CRP2_BRADI; Uncharacterized protein
STRING	BRADI4G31780.1	1e-126	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-69	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi4g31777.1.p