PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g31770.2.p
Common NameBRADI_4g31770, LOC100825034
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 503aa    MW: 53406 Da    PI: 8.6302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g31770.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.46e-066486123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C++C++ F r  nL+ H r+H
  Bradi4g31770.2.p 64 YVCEICNQGFQRDQNLQMHRRRH 86
                      9*********************9 PP
2zf-C2H211.60.00086143164223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  C+k +  +s++k H++t+
  Bradi4g31770.2.p 143 ACARCSKAYAVHSDYKAHLKTC 164
                       6*******************98 PP
3zf-C2H210.70.0016172190523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr +++  H+ t+
  Bradi4g31770.2.p 172 DCGRVFSRVESFIEHQDTC 190
                       9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-56187No hitNo description
Gene3DG3DSA:3.30.160.602.1E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976486IPR007087Zinc finger, C2H2
SMARTSM003550.00526486IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355110106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001133163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355230142169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLGPTAGAGP PPEEDMPEPF GSLQIATTSA GAATKRKRRP AGTPDPDAEV VSLSPRTLLE  60
SDRYVCEICN QGFQRDQNLQ MHRRRHKVPW KLLKREAGEA ARKRVFVCPE PSCLHHDPSH  120
ALGDLVGIKK HFRRKHSGHR QWACARCSKA YAVHSDYKAH LKTCGTRGHS CDCGRVFSRV  180
ESFIEHQDTC NAGCPQAAGS DVPAATARGV AAVASSQQQQ QVPAPAASLS RTASSTSPSS  240
DIVISPVAWP SAGAGAMRSP TAAAFHRFDQ APSPPEGRGG GHNLELQLMP PSSGCTVGGS  300
LAPGVAPSCY GAPPCSPGDD AAMQLQLTIG FCSGDVNRGE LRPFGRDDAA AHARAKQEAA  360
REELRQAMGE KAAADEARAQ AKRQGELAEQ ELASAKRMRH QAQVELSRAH ALREHAVRQV  420
NATLLQITCL SCRQKFRAAA ATTAIRPAPA AAMSAEQQVA CSYVSSSVVT EGGDADTGNV  480
DDQPLNLGGF RRRQQHARMD AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-17138198363Zinc finger protein JACKDAW
5b3h_F6e-17138198363Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g31770.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3696310.0AK369631.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2094L03.
GenBankAK3735950.0AK373595.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3035P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238230.20.0protein indeterminate-domain 16
SwissprotQ9C9X71e-125IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A0Q3ESJ60.0A0A0Q3ESJ6_BRADI; Uncharacterized protein
STRINGBRADI4G31770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-105C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Arendsee ZW,Li L,Wurtele ES
    Coming of age: orphan genes in plants.
    Trends Plant Sci., 2014. 19(11): p. 698-708
    [PMID:25151064]
  2. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]