PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g31040.1.p
Common NameBRADI_4g31040, LOC100825554
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 402aa    MW: 43419.3 Da    PI: 4.4714
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g31040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19129178255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Bradi4g31040.1.p 129 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 178
                       69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.90E-32129187No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32129188IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22129187IPR016177DNA-binding domain
SMARTSM003803.3E-38129192IPR001471AP2/ERF domain
PROSITE profilePS5103223.933129186IPR001471AP2/ERF domain
PfamPF008476.8E-12130178IPR001471AP2/ERF domain
PRINTSPR003672.7E-11130141IPR001471AP2/ERF domain
PRINTSPR003672.7E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAILSGF IPPSAAAAAA AAKKKKQQQQ RVMADALWPG LQRKAPQAEV EDFEADFREF  60
ERDSSEEDAG GDDDDVVEVV PPPPAKAGFA FAAVAEGALP PTVDAVTIPK SVEHDGSGTG  120
PVKRNRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD AEARKIRGKK  180
AKVNFPDEEP TSWKSTVKTI AQKSIQKATA TNSAKLTTPP NTCDDESFSH LSNADNDLFA  240
MFAFDDKKVP AKPDESGDFL TQAKPLVPTE TFGMNMLSDQ SSNSFGSTDF GWDDEAMTPD  300
YTSVFVPDAP YSKVAYLEGG APKRMRINFG VDLSPQGNDA PNLAQDISVF DPEMKYLPLP  360
YVGSSSDRSM DNLVVNDVMQ DGASNVDVWG LDELLMAAGA Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20128186160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20129186563ATERF1
3gcc_A9e-20129186563ATERF1
5wx9_A3e-191291881474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g31040.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578162.10.0ethylene-responsive transcription factor 1
TrEMBLI1IQD00.0I1IQD0_BRADI; Uncharacterized protein
STRINGBRADI4G31040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.24e-32related to AP2 12