PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g30885.1.p | ||||||||
Common Name | BRADI_4g30885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 37954.5 Da PI: 8.5659 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.8 | 1.1e-12 | 51 | 99 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd l +v+ G+ +W + +r++g++R++k+c++rw++yl Bradi4g30885.1.p 51 KGPWAAEEDAVLRAYVAANGTAgNWIALPRKIGLNRCGKSCRLRWLNYL 99 79******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 40 | 8.9e-13 | 106 | 148 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd l+ + G++ W+tIa ++ gRt++++k++w++ Bradi4g30885.1.p 106 GGFTDEEDRLICSLYVSIGSR-WSTIAGQLP-GRTDNDVKNYWNT 148 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.259 | 46 | 99 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-24 | 48 | 146 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-9 | 50 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-11 | 51 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-22 | 52 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.69E-6 | 53 | 99 | No hit | No description |
PROSITE profile | PS51294 | 20.575 | 100 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-10 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-10 | 106 | 148 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-22 | 107 | 154 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.88E-8 | 108 | 150 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MTVLSRHIII HQPAPSTQPS ASSQRPAGEP KGARDDAMGR APCCDKASVK KGPWAAEEDA 60 VLRAYVAANG TAGNWIALPR KIGLNRCGKS CRLRWLNYLR PNIRHGGFTD EEDRLICSLY 120 VSIGSRWSTI AGQLPGRTDN DVKNYWNTKL KRRLLGAGRR PIRYALAQQP RLLPAIPAAY 180 SAVERMQLSV QLQRHHLHPA GHQLQETPGL ITFHSNLASP PWPSPSPSPR QQQPGYSAGF 240 WSHFGTSSRV SVPDDHQCAW RDSSGGTATP LSSSTTTGET AAGIDSSSST PTASPAAFGC 300 EMDDEIEMLL RQIRGLEENV DGSAGSWSSA CSTPGVDSVF HDYLQEYNM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-24 | 51 | 154 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g30885.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063260 | 1e-120 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024318966.1 | 0.0 | transcription factor RAX3 | ||||
TrEMBL | A0A0Q3LCQ9 | 0.0 | A0A0Q3LCQ9_BRADI; Uncharacterized protein | ||||
STRING | Traes_5BL_C1D4586B1.2 | 1e-126 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13265 | 26 | 32 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37780.1 | 5e-66 | myb domain protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g30885.1.p |