PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30617.1.p
Common NameBRADI_4g30617, LOC100845338
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 394aa    MW: 42827.5 Da    PI: 7.7847
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30617.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-1656115155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  Bradi4g30617.1.p  56 SIYRGVTRHRWTGRFEAHLWDkNSWNEsqnKKgKQVYLGAYDEEEAAARAYDLAALKYWG 115
                       57*******************888866656446*************************98 PP
2AP252.11.7e-16158209155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Bradi4g30617.1.p 158 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 209
                       89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-1356115IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1856125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.7E-1757124IPR001471AP2/ERF domain
PROSITE profilePS5103220.66657123IPR001471AP2/ERF domain
SMARTSM003803.8E-2857129IPR001471AP2/ERF domain
PRINTSPR003674.8E-65869IPR001471AP2/ERF domain
CDDcd000182.85E-23158219No hitNo description
PfamPF008471.6E-12158209IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18158219IPR016177DNA-binding domain
PROSITE profilePS5103218.36159217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-18159218IPR001471AP2/ERF domain
SMARTSM003801.7E-25159223IPR001471AP2/ERF domain
PRINTSPR003674.8E-6199219IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAKPRKNSAA ANNNNNDNST NANNAVAEAA AADVRAKPKK RTRKSVPRES PSQRSSIYRG  60
VTRHRWTGRF EAHLWDKNSW NESQNKKGKQ VYLGAYDEEE AAARAYDLAA LKYWGPDTIL  120
NFPLSVYDDE LKEMEGQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF  180
GNKYLYLGTY ATQEEAAMAY DMAAIEYRGL NAVTNFDLSR YIKWLRPGGG VDSAAAAAAR  240
NPHPMLAGLA TQEELPAIDH LLDGMAFQQH GLHSSSAAAA AAQEFPLPPA LGHAPTTSAL  300
SLLLQSPKFK EMIERTSAAE TTTTATTTSS SSSPRPAASP QCSFPEDIQT FFGCDDGVGV  360
GVGAVGYTDV DGLFFGDLSA YASSTAFHFE LDL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30617.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396320.0BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551110.0BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275880.0KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578142.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-105AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLI1IQ860.0I1IQ86_BRADI; Uncharacterized protein
STRINGBRADI4G30617.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-95ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]