PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30360.1.p
Common NameBRADI_4g30360, LOC100839756
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 340aa    MW: 36502 Da    PI: 8.74
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.9e-29179238159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cp kkkv+rsae+ +v+e tYegeHnh+
  Bradi4g30360.1.p 179 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPIKKKVQRSAENSSVLEATYEGEHNHP 238
                       58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.522174240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-28175240IPR003657WRKY domain
SuperFamilySSF1182901.26E-24176240IPR003657WRKY domain
SMARTSM007747.8E-33179239IPR003657WRKY domain
PfamPF031065.4E-24180238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDTAPVCLDL MVGLPMAREP SSCTGTRTLA EVPSPACGRA ASMTNEEAKI LQAKLAQVSD  60
ENRRLTEMIA HLYGNRVARE SSPSACTAAS PSSNKRVRAL SPPATSTAAS PASSKKRGRE  120
SDSVETSNSR GEAANCDKKS GTVDAQHVDS PLRDDGTYRR IKVKRVCTRI DPSDTSLVVK  180
DGYQWRKYGQ KVTRDNPSPR AYFRCAFAPS CPIKKKVQRS AENSSVLEAT YEGEHNHPQP  240
TRAGELTSSC VTRSGSVPCS ISINSSGPTI TLDLTKNGGG VQVVEAGEAQ QPDLKKVCRE  300
VASPEFRREL VEQMARELTS DPNFTGALAA AILQKLPEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-181782401374WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30360.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4881041e-177EF488104.1 Hordeum vulgare subsp. vulgare WRKY transcription factor 3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578125.10.0WRKY transcription factor WRKY76
SwissprotQ6IEK51e-136WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLI1IQ580.0I1IQ58_BRADI; Uncharacterized protein
STRINGBRADI4G30360.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.11e-51WRKY DNA-binding protein 40