PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g30081.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 146aa    MW: 15882.5 Da    PI: 8.4308
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g30081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF694.3e-221411151
                      HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      v fskRr+g++KKA+EL +LCdaeva+++fs+ gklyey+s
  Bradi4g30081.1.p  1 VRFSKRRAGLFKKAFELAILCDAEVALLVFSPAGKLYEYAS 41
                      56*************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.67143IPR002100Transcription factor, MADS-box
PfamPF003192.4E-20139IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-23159IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-15142IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-16520IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162041IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
VRFSKRRAGL FKKAFELAIL CDAEVALLVF SPAGKLYEYA SSSIEGTYDR YQQFAGAVRN  60
KYRGGASTSN NEDPSDIQSR LREITAWSLH NNTDEADASN LEKLEKLLTD ALRITESKKT  120
LAKQNSNRSA TGENSNGPTG EGGNT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g30081.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693331e-144KF469333.1 Brachypodium distachyon MADS-box transcription factor 39 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288309.15e-85agamous-like MADS-box protein AGL14-like
SwissprotQ9XJ616e-65MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A2K2CRB01e-101A0A2K2CRB0_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI2G59120.22e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.21e-24AGAMOUS-like 71
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]