PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g29980.1.p | ||||||||
Common Name | BRADI_4g29980, LOC100831781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 277aa MW: 30250.6 Da PI: 6.5117 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.9 | 1.8e-34 | 104 | 184 | 3 | 87 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..seceaesssssasnsss 87 ++drhski T++g RdRR+Rls+++a+ fF+Lqd+LGfdk+skt++WLl+q+kpai l ssss + + +++n+++ Bradi4g29980.1.p 104 FRTDRHSKIRTAQGVRDRRMRLSLDVARDFFALQDQLGFDKASKTVDWLLTQSKPAIERLSAESSSSRrlNVV------RAGENQGK 184 689***********************************************************96666622222......22221111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 33.931 | 105 | 163 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.6E-33 | 105 | 173 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MLPYPNPHRF WISQEAPTQQ APNPTFAMPP THAHLDQNQN HIQHYDHFFP GHGQHFNSET 60 LEAVLRPRPT VVPPATGSTL EPAAHNAGGG VAAIGHGRPR KRPFRTDRHS KIRTAQGVRD 120 RRMRLSLDVA RDFFALQDQL GFDKASKTVD WLLTQSKPAI ERLSAESSSS RRLNVVRAGE 180 NQGKETEAAA GSGKGALDVL EKAMRARSGG GTSLPMEHTS CEMLNGCGRL VSALPMSTGE 240 YYYDLGELML SNNGGGEGDD DGEYEEDGDF LDGMQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g29980.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM578672 | 4e-82 | KM578672.1 Arthraxon prionodes isolate TK103-vimineum6 retarded palea 1 protein (rep1) gene, partial cds. | |||
GenBank | KM578673 | 4e-82 | KM578673.1 Arthraxon prionodes isolate TK103-vimineum8 retarded palea 1 protein (rep1) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578100.1 | 0.0 | uncharacterized protein LOC100831781 | ||||
TrEMBL | A0A0Q3PLC0 | 0.0 | A0A0Q3PLC0_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G29980.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-27 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g29980.1.p |
Entrez Gene | 100831781 |