PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g29936.1.p

Common Name

BRADI_4g29936, LOC106866612

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 383aa MW: 43981.7 Da PI: 6.3556

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g29936.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.2	4.3e-21	157	282	1	91
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.................................tekerrtrae 57 kfYn+YA +vGFs+ ++++++s ++ g++t+ t +C+k gk++ee+ + ++ rrt+++ Bradi4g29936.1.p 157 KFYNNYAMKVGFSTAIAHKYHSrnkTHMGKVTRVTITCNKAGKPTEEDMEankeaaqrgeglgknkpakrrvrktkegtnderNVLMRRTNTV 249 6*****************99554456789************9999***********************98887777888 PP FAR1 58 trtgCkaklkvkkekdgkwevtkleleHnHelap 91 t C a+++v d++w++t+l+l HnHel p Bradi4g29936.1.p 250 VLTACPATMVVAYI-DDVWKITRLDLTHNHELHP 282 **********.9*************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-19	157	282	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MTWLLADHNF SEYIDDHSFY ITSDRNININ HLEQEELENM YNMQNQISVP ETLAEKHVED 60 HGDWMQSDEP ENILNPDELE AEAGDIPSMD TENAENNNER NPETDPEGNK EPLTQEEVIE 120 FIQSSQQLGQ GGAAQEIEHM HMPELGMVFK TEEEGHKFYN NYAMKVGFST AIAHKYHSRN 180 KTHMGKVTRV TITCNKAGKP TEEDMEANKE AAQRGEGLGK NKPAKRRVRK TKEGTNDERN 240 VLMRRTNTVV LTACPATMVV AYIDDVWKIT RLDLTHNHEL HPPGEARFLR SHKNMTLEEK 300 LMIRTCSACK LPTRKIMAIL AYMRGGLSSL PYTKKDVSNI RTSIRTESGR SDMMKVLEYF 360 LKKKEKMQLS FTKLTRMKRA EF*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MTWLLADHNF SEYIDDHSFY ITSDRNININ HLEQEELENM YNMQNQISVP ETLAEKHVED  60
HGDWMQSDEP ENILNPDELE AEAGDIPSMD TENAENNNER NPETDPEGNK EPLTQEEVIE  120
FIQSSQQLGQ GGAAQEIEHM HMPELGMVFK TEEEGHKFYN NYAMKVGFST AIAHKYHSRN  180
KTHMGKVTRV TITCNKAGKP TEEDMEANKE AAQRGEGLGK NKPAKRRVRK TKEGTNDERN  240
VLMRRTNTVV LTACPATMVV AYIDDVWKIT RLDLTHNHEL HPPGEARFLR SHKNMTLEEK  300
LMIRTCSACK LPTRKIMAIL AYMRGGLSSL PYTKKDVSNI RTSIRTESGR SDMMKVLEYF  360
LKKKEKMQLS FTKLTRMKRA EF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	231	RRVRKTK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g29936.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757548.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_014757549.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
Refseq	XP_024311138.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A0Q3HA03	0.0	A0A0Q3HA03_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15170	7	9
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi4g29936.1.p
Entrez Gene	106866612