PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g29796.1.p
Common NameBRADI_4g29796, LOC100828336
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 269aa    MW: 29674.7 Da    PI: 5.1806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g29796.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.8e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lv      G  +W+++++  g+ R++k+c++rw +yl
  Bradi4g29796.1.p 14 KGPWTAEEDQKLVSFLLSNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding51.91.8e-1670111447
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++ E++  ++++++lG++ W++Ia++++ gRt++++k++w+++
  Bradi4g29796.1.p  70 LSESEEKTVIELHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
                       5899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-19563IPR009057Homeodomain-like
PROSITE profilePS5129414.172961IPR017930Myb domain
SuperFamilySSF466891.27E-2611108IPR009057Homeodomain-like
SMARTSM007171.3E-111363IPR001005SANT/Myb domain
PfamPF002497.8E-141461IPR001005SANT/Myb domain
CDDcd001672.59E-81661No hitNo description
PROSITE profilePS5129426.68962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2564117IPR009057Homeodomain-like
SMARTSM007171.2E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1570111IPR001005SANT/Myb domain
CDDcd001674.15E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL SNGQCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SESEEKTVIE LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG  120
IDPATHKPLL HSASAPPPPP QQNSLEEKAT AVVAATTGRV QDEFCADDAI MQLLDDIILP  180
CDVVVAPAPL DTTDSSPAES SSSSSSLGGG FEDDCWLPQM MEWPAESMYL MGLDDMVTGP  240
AAASAWEFED PFNTYQRIAL FDHQDTWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g29796.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752631e-155AK375263.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578088.10.0transcription factor MYB20
TrEMBLI1IPZ00.0I1IPZ0_BRADI; Uncharacterized protein
STRINGBRADI4G29796.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.17e-86myb domain protein 20