PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g29010.1.p | ||||||||
Common Name | BRADI_4g29010, LOC100838838 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 283aa MW: 30380.7 Da PI: 6.5178 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.2e-21 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Bradi4g29010.1.p 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 158 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.07E-30 | 108 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.4E-33 | 109 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-23 | 109 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 109 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-15 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASASPPPL NSHPSPTSPF SFPHAAYQGY PYGVQAQAQA 60 ELSPAEMHYI QARLHLQRQT GPPGHLGPRA QPMKPASTAA ATPPRPQKLY RGVRQRHWGK 120 WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPDNAA SRGPLDASVD 180 AKLQTLCQNI TASKNAKKSK SSSASAATSS TPTSNCSSPS SDEASSSLES AESSPSPATN 240 AAEVPEMQQL DFSEAPWDEA AGFALTKYPS YEIDWDSLLA TN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g29010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009075 | 0.0 | BT009075.1 Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence. | |||
GenBank | DQ334407 | 0.0 | DQ334407.1 Triticum aestivum drought-responsive factor-like transcription factor DRFL1a (DRFL1a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578039.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | I1IPP6 | 0.0 | I1IPP6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G29010.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 4e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g29010.1.p |
Entrez Gene | 100838838 |