PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g28883.1.p

Common Name

BRADI_4g28883, LOC104585088

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

LBD

Protein Properties

Length: 383aa MW: 41558.3 Da PI: 4.8314

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g28883.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.4	1e-37	68	167	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC++dC+la+yfpa+q+ +f n+h+lFG+sn++++l+++p+e r+dam++l+++Ae+ra dPv G++++ +lq+ql+ ++ae Bradi4g28883.1.p 68 ACAACKYQRRKCNPDCPLARYFPADQQLRFLNAHRLFGVSNIQRTLRETPPELRTDAMRALIFQAEVRAYDPVGGCCRMAIDLQRQLDLAQAE 160 7******************************************************************************************** PP DUF260 94 lallkee 100 l++l ++ Bradi4g28883.1.p 161 LSALLQQ 167 *998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.036	67	168	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-36	68	164	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MTSNSNTKQP PPPTRHLHIT TPNPTSSSAT TSSHSSRSPR VSTTAGGASS PSSGSGHHQN 60 PNQQQNQACA ACKYQRRKCN PDCPLARYFP ADQQLRFLNA HRLFGVSNIQ RTLRETPPEL 120 RTDAMRALIF QAEVRAYDPV GGCCRMAIDL QRQLDLAQAE LSALLQQLEL CRRQQHHAVD 180 DDDQMLLVAG AGNGQDVVDD VAADALYANG AGGQENVVLG QANLGEHYLL EEQGQPEPEP 240 HQLYDYFYYD GTAGDETSSH AWTNDVHAHQ QQYGNNGGSP VELVEQLEQH CQIETQFVDV 300 FDVKAERAAA SSTAIESHIN ADNGNASQFE DLHENEEKAM VSTAVVKSEL DHQVAAAAQM 360 AESSGTGSHC QLELGFSSSN AW*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MTSNSNTKQP PPPTRHLHIT TPNPTSSSAT TSSHSSRSPR VSTTAGGASS PSSGSGHHQN  60
PNQQQNQACA ACKYQRRKCN PDCPLARYFP ADQQLRFLNA HRLFGVSNIQ RTLRETPPEL  120
RTDAMRALIF QAEVRAYDPV GGCCRMAIDL QRQLDLAQAE LSALLQQLEL CRRQQHHAVD  180
DDDQMLLVAG AGNGQDVVDD VAADALYANG AGGQENVVLG QANLGEHYLL EEQGQPEPEP  240
HQLYDYFYYD GTAGDETSSH AWTNDVHAHQ QQYGNNGGSP VELVEQLEQH CQIETQFVDV  300
FDVKAERAAA SSTAIESHIN ADNGNASQFE DLHENEEKAM VSTAVVKSEL DHQVAAAAQM  360
AESSGTGSHC QLELGFSSSN AW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	69	163	12	106	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	69	163	12	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g28883.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239347.1	0.0	uncharacterized protein LOC104585088
TrEMBL	A0A0Q3IVG7	0.0	A0A0Q3IVG7_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61
Representative plant	OGRP5524	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-22	LOB domain-containing protein 22

Link Out ? help Back to Top
Phytozome	Bradi4g28883.1.p
Entrez Gene	104585088