PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g27770.1.p | ||||||||
Common Name | BRADI_4g27770, LOC100827809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 37313.3 Da PI: 7.4309 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.3e-05 | 153 | 172 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C C+ksF+r n++ H+ Bradi4g27770.1.p 153 FSCAVCNKSFNRFNNMQMHM 172 89*****************9 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 250 | 272 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C Cgk+F + + ++H +++ Bradi4g27770.1.p 250 YACRRCGKRFAVRGDWRTHEKNC 272 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.72E-5 | 149 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-5 | 153 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.72 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 213 | 245 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 236 | 270 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.84E-6 | 236 | 270 | No hit | No description |
PROSITE profile | PS50157 | 8.704 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 58 | 250 | 270 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
GO:0010588 | Biological Process | cotyledon vascular tissue pattern formation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MHSYRAMHPY HPAPAAAASS KQQAEEDDQS MLLLSLWPPG HHDASSSSHS AASSCSPSWF 60 ISSHYNNGGG GAGGGAGGFM FHDQQQPVVV DHPNVSVSLS IAPPCAGAPN NLQAAGGSMS 120 FAAPPSSPSL QQQQPSQYWI PSAAEILVGS TQFSCAVCNK SFNRFNNMQM HMWGHGSQYR 180 KGSDSLRGAV TTTTTTTTAA LTPPPSLMRL PCYCCAEGCR NNIDHPRARP LKDFRTLQTH 240 YRRKHGARPY ACRRCGKRFA VRGDWRTHEK NCGKLWFCVC GSDFKHKRSL KDHVRSFGGG 300 HAPHIVESSS VGAVDDDEDY DDDDGDLLQH DDNANAGEGS DMILA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g27770.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373299 | 1e-134 | AK373299.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026G04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576402.1 | 0.0 | zinc finger protein WIP6 | ||||
Swissprot | Q9FX68 | 2e-98 | ZWIP6_ARATH; Zinc finger protein WIP6 | ||||
TrEMBL | I1IPA3 | 0.0 | I1IPA3_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G27770.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11306 | 32 | 41 | Representative plant | OGRP410 | 15 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13290.1 | 8e-91 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g27770.1.p |
Entrez Gene | 100827809 |