PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g27620.1.p | ||||||||
Common Name | BRADI_4g27620, LOC100838837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 282aa MW: 30540.6 Da PI: 6.4253 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.9 | 2e-32 | 23 | 77 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt eLHe+Fveav+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl Bradi4g27620.1.p 23 RQRLRWTDELHEQFVEAVTQLGGPDRATPKGVLRIMGTPGLTIYHVKSHLQKYRL 77 58****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.814 | 20 | 80 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-17 | 22 | 77 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-31 | 22 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.1E-25 | 24 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.9E-9 | 25 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.7E-23 | 110 | 155 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MELGGNNMGS NDGANSKASL AARQRLRWTD ELHEQFVEAV TQLGGPDRAT PKGVLRIMGT 60 PGLTIYHVKS HLQKYRLAKY IPDSSTDGNK SDNKDPGDSL AGLDGSSGLQ ISEALKLQME 120 VQKRLHEQLE VQRQLQLRIE AQGKYLKKII EEQQRYGGIK SETPGAGGTA TVSSDQFPDS 180 ERTDPSTPAP TSESSQGVPF KRDNGGQTEA TKSPCHDEQL TTDSNCHPGS PTVSPKHERA 240 AKRQRGNGTE FSEADLSLPQ HIFESSSGPE FQQCSVPYSG H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 23 | 80 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g27620.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365733 | 0.0 | AK365733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037A13. | |||
GenBank | AK373855 | 0.0 | AK373855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045J14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577958.1 | 0.0 | myb family transcription factor PHL7 | ||||
Refseq | XP_010238039.1 | 0.0 | myb family transcription factor PHL7 | ||||
Swissprot | Q9SJW0 | 1e-91 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | I1IP84 | 0.0 | I1IP84_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G27620.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2220 | 38 | 96 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-68 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g27620.1.p |
Entrez Gene | 100838837 |