PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g27607.3.p

Common Name

BRADI_4g27607, LOC100838525

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 256aa MW: 27805.7 Da PI: 9.004

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g27607.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.7e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYR+ Bradi4g27607.3.p 35 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 89 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-31	32	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.422	32	92	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-16	35	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-24	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	37	88	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-19	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MFPPGLIHHR SDGPGPGEVS RSGGAPSLVL TADPKPRLRW TADLHERFVD AVAQLGGPEK 60 ATPKTILRTM GVKGLTLFHL KSHLQKYRMG KQTGKETSEQ SKDGSYLLDA QGGMSLSPRV 120 STQDAKESQE VKEALRAQME MQRCLHDKVE VQKHVDIRMG AHQTYINNIL AKACKIVSEQ 180 FASSNFSISD HNLPELSSCS VMCDTPTDAL SSSIFHQLSV SSMSLHSPGG GKPSPSGMEG 240 QLLLQRSPEF KRKSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g27607.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363665	0.0	AK363665.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017P09.
GenBank	AK367354	0.0	AK367354.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055J10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003577957.1	0.0	protein PHR1-LIKE 2
Swissprot	Q94A57	2e-64	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	I1IP83	0.0	I1IP83_BRADI; Uncharacterized protein
STRING	BRADI4G27607.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	7e-67	G2-like family protein

Link Out ? help Back to Top
Phytozome	Bradi4g27607.3.p
Entrez Gene	100838525

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]