PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g27607.2.p | ||||||||
Common Name | BRADI_4g27607, LOC100838525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | G2-like | ||||||||
Protein Properties | Length: 256aa MW: 27805.7 Da PI: 9.004 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.7e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ekAtPktil++m+vkgLtl h+kSHLQkYR+ Bradi4g27607.2.p 35 KPRLRWTADLHERFVDAVAQLGGPEKATPKTILRTMGVKGLTLFHLKSHLQKYRM 89 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-31 | 32 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.422 | 32 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.23E-16 | 35 | 90 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.1E-24 | 35 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 37 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.6E-19 | 130 | 175 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MFPPGLIHHR SDGPGPGEVS RSGGAPSLVL TADPKPRLRW TADLHERFVD AVAQLGGPEK 60 ATPKTILRTM GVKGLTLFHL KSHLQKYRMG KQTGKETSEQ SKDGSYLLDA QGGMSLSPRV 120 STQDAKESQE VKEALRAQME MQRCLHDKVE VQKHVDIRMG AHQTYINNIL AKACKIVSEQ 180 FASSNFSISD HNLPELSSCS VMCDTPTDAL SSSIFHQLSV SSMSLHSPGG GKPSPSGMEG 240 QLLLQRSPEF KRKSC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 4e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-19 | 35 | 91 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g27607.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363665 | 0.0 | AK363665.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017P09. | |||
GenBank | AK367354 | 0.0 | AK367354.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2055J10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577957.1 | 0.0 | protein PHR1-LIKE 2 | ||||
Swissprot | Q94A57 | 2e-64 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | I1IP83 | 0.0 | I1IP83_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G27607.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3427 | 38 | 73 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 7e-67 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g27607.2.p |
Entrez Gene | 100838525 |
Publications ? help Back to Top | |||
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