PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g27170.1.p

Common Name

BRADI_4g27170, LOC100846229

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C2H2

Protein Properties

Length: 315aa MW: 35263.1 Da PI: 8.4158

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g27170.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00017	163	182	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+Fsr nL+ H+ Bradi4g27170.1.p 163 FTCPVCCKTFSRYNNLQMHM 182 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.52E-6	154	185	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.1E-6	163	182	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.847	163	185	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	165	185	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.829	267	304	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MANPYAFLRR PHIDPFFPFQ RSLVSSPSSP TKQALPLLSL LPAASSHDHN KTLSSCGYAG 60 DHRQHKKEDD QDMNISLQIG PPSPNCALNL VNSCAIDAPV AASQDQCSGG DQKVEEEEEE 120 LEDDDGGDGS DDLCLEYLAV GKLTKGKYWI PTVTQILIGP THFTCPVCCK TFSRYNNLQM 180 HMWGHGVQYR RGPESLRGTQ PAAMLRLPCF CCAPGCRSHV DHPRARPLKD FRTLQTHYKR 240 RHCGKPFLCR KCGKPLAVRG DWRTHEKNCG RRWHCACGSD FKHKRSLKDH IRAFGHDLHV 300 ERPPACYNRP SSPP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g27170.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357467	1e-176	AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBank	AK359410	1e-176	AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576382.1	0.0	zinc finger protein WIP2
Swissprot	Q9SVY1	2e-96	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	I1IP28	0.0	I1IP28_BRADI; Uncharacterized protein
STRING	BRADI4G27170.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	5e-96	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Bradi4g27170.1.p
Entrez Gene	100846229

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]