PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g27100.1.p
Common NameBRADI_4g27100, LOC100845620
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 473aa    MW: 51745.5 Da    PI: 8.3717
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g27100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-11180208533
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                       k  rr+++NReAAr+sR+RKka+i++Le+
  Bradi4g27100.1.p 180 KTLRRLAQNREAARKSRLRKKAYIQQLET 208
                       7789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-6176238IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-7177221No hitNo description
PROSITE profilePS502178.749178221IPR004827Basic-leucine zipper domain
PfamPF001702.4E-8180208IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-7181221No hitNo description
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141445.9E-27270343IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MGGFRAEDHH HNQPLELPLG FRTASPPPMI ASSSMSKEST SYDMADFDQA AIFLYLDGHD  60
QQSIQEQRQT LNIFPSQPMH AAEQLAAAKI NGGAAMAAMM LPNGGNPQQP SPRRPEQHQQ  120
GAAGGLNASP ASLLPNSAKE NKNSSTNLIK KEGTSSGKGA TSSSTDQERE AGVRRTQDPK  180
TLRRLAQNRE AARKSRLRKK AYIQQLETSR IRLSQIEQQV QAARVQGVLL GTTGDQHHQL  240
QGLPNSAPSV AGMFDAEYGR WVEEHGKLIF QLRAALNEHV PDCNQLQALV GAAMAQHDEL  300
LNLKAAIARA DIFHLLCGVW ASPAERCFLW LGGFRPSDVI KVMLKHVEPL SEAQLLGIYN  360
LQQGVQETEE ALNQGMESLQ HSLSDTVAAP EVSAGNFMGH MSLALNKIAS MEAIVRQADS  420
LRQQTLQKLH QTLTIRQAAR CLVAIADYFH RLRAISTLWA ARPRHDQQGP HP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g27100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576380.10.0transcription factor TGAL7
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLI1IP150.0I1IP15_BRADI; Uncharacterized protein
STRINGBRADI4G27100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.21e-109bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]