PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g26670.6.p

Common Name

BRADI_4g26670, LOC100838328

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 554aa MW: 60557.6 Da PI: 7.2043

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g26670.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	247	275	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Bradi4g26670.6.p 247 KIMRRLAQNREAARKSRLRKKAYIQQLES 275 5679***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0023	241	318	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-8	247	275	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.49E-6	247	282	No hit	No description
PROSITE pattern	PS00036	0	250	265	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.9E-7	250	275	No hit	No description
Pfam	PF14144	2.5E-29	327	401	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MEEGSSSSGH HHPRHHSSKD PHQQHVLAGY GAGVGGFHGA AAMPTTTSSM PSASFFAEQE 60 EGAGYLGELE EALMHHHHHH HQAGGSSKNT AIHHLHQQTV AAAAAAHHHG HGVHNNNTTM 120 AAMAIPLPFH AGTTATGAAA ARPPPTLDIF PTWTIRPLAP PHHHTPKEGS NLTADSTDSE 180 SSSKNNNIKH SPDHQKVQAV SMAMASQFHQ ISQQQQNHQQ QQHHHQQKMA TSSTHSDRTG 240 KALDPNKIMR RLAQNREAAR KSRLRKKAYI QQLESGKIRL AQLELDLNRA RSQGLLLGGA 300 PGGNCTADAA MFDAEYSRWL DDDSRRMIEL RGGLHAHLPD SDLRAIVDDA LTHYNELFRL 360 KDTAARTDVF HLITGMWATP AERCFLWIGG FRPSDMLKTL VPQLDPLTEQ QVSGICSLRQ 420 SLQQAEEALT QGLEQLHQSL ADTVAGSGSL TDDTNMGSFL GDMALALGKL SNLENFVIQA 480 DNLRLQTLHQ MHRILTVRQA ARCFLAIGEY HNRLRALSSL WASRPREIMM ADEGNCGELS 540 IAAHPSESQY AAF*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MEEGSSSSGH HHPRHHSSKD PHQQHVLAGY GAGVGGFHGA AAMPTTTSSM PSASFFAEQE  60
EGAGYLGELE EALMHHHHHH HQAGGSSKNT AIHHLHQQTV AAAAAAHHHG HGVHNNNTTM  120
AAMAIPLPFH AGTTATGAAA ARPPPTLDIF PTWTIRPLAP PHHHTPKEGS NLTADSTDSE  180
SSSKNNNIKH SPDHQKVQAV SMAMASQFHQ ISQQQQNHQQ QQHHHQQKMA TSSTHSDRTG  240
KALDPNKIMR RLAQNREAAR KSRLRKKAYI QQLESGKIRL AQLELDLNRA RSQGLLLGGA  300
PGGNCTADAA MFDAEYSRWL DDDSRRMIEL RGGLHAHLPD SDLRAIVDDA LTHYNELFRL  360
KDTAARTDVF HLITGMWATP AERCFLWIGG FRPSDMLKTL VPQLDPLTEQ QVSGICSLRQ  420
SLQQAEEALT QGLEQLHQSL ADTVAGSGSL TDDTNMGSFL GDMALALGKL SNLENFVIQA  480
DNLRLQTLHQ MHRILTVRQA ARCFLAIGEY HNRLRALSSL WASRPREIMM ADEGNCGELS  540
IAAHPSESQY AAF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g26670.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576364.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758844.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758845.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758846.1	0.0	transcription factor TGAL4 isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A0Q3PJP7	0.0	A0A0Q3PJP7_BRADI; Uncharacterized protein
STRING	BRADI4G26670.3	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-137	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi4g26670.6.p
Entrez Gene	100838328

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]