PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26470.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 426aa    MW: 45364.8 Da    PI: 4.4277
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26470.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM35.62.7e-111712418127
               NAM  18 yLkkkvegkk.leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya...tgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                       yL++ ++g++  ++e +i+ +d+y + P dL +++    ++++ yf+++ ++       g r++ra++   W +  + k+v+++ +ge +g  
  Bradi4g26470.2.p  17 YLRRWIAGDPvPDAEGIIHAADVYGHPPADLAAAFPRlpKTHDRYFYTTCKRVPIrggAGYRTSRAVAGVSWGTNNN-KPVVDAvTGEPIGFV 108
                       9*********44445569999**********8533333356688***99998766333577****999999*96655.66666559999**** PP

               NAM 104 ktLvfykgrapkgektdWvmheyr 127
                       +tL +         ktdW+m+e++
  Bradi4g26470.2.p 109 ETLKYG--------KTDWLMEEFH 124
                       ***997........8********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.0251146IPR003441NAC domain
SuperFamilySSF1019411.31E-1616146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043086Biological Processnegative regulation of catalytic activity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
CRCSASASAS APRFGLYLRR WIAGDPVPDA EGIIHAADVY GHPPADLAAA FPRLPKTHDR  60
YFYTTCKRVP IRGGAGYRTS RAVAGVSWGT NNNKPVVDAV TGEPIGFVET LKYGKTDWLM  120
EEFHRLPEEA AADGIAESVL CRLYVKEHAK PGSLAVAESI AGDRILQQEP AAAAGDLLLQ  180
QAAMAAGPQR MPPSSPRNRR VMALPVLPAP APATIQQKRA APVVADAPRP KKRTRAAAPA  240
AATRPVMASP PAATAPPAPK VVPLRQVPRP SGCPPPPPGL LGLEPRRPTL TVAELMALFE  300
KNDSAVQEEA AQEEDEDEWE CLDAIQQQSP TAAAAAQQEE APADDDDQDF CDFASALETD  360
LETETAAIPT EEDDGGAARS LVADERGDDD IALDINDVLS FVDVEDDGDG AWERVPLSDF  420
THLRY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189199RMPPSSPRNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g26470.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310393.10.0atherin-like
TrEMBLA0A2K2CQB30.0A0A2K2CQB3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI4G26470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2262136
Representative plantOGRP9262314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-08NAC domain containing protein 47