PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g25717.1.p | ||||||||
Common Name | BRADI_4g25717, LOC100822988 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 240aa MW: 25665.2 Da PI: 8.4576 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 70.6 | 2.2e-22 | 51 | 112 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v+++ ++dp ++ +tY ++H+++ Bradi4g25717.1.p 51 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCN 112 8***************************99999*******876157**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-23 | 39 | 113 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-22 | 43 | 113 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.157 | 45 | 114 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-33 | 50 | 113 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-25 | 51 | 111 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MALDSVPAYP GDLGSSTTRA SGSGGGGGGR TQHRIRKEER TWTADTYAPY DDGHQWRKYG 60 EKKLSNSNFP RFYYRCTYKN DMKCPATKQV QQKDTSDPPL FSVTYFNHHT CNTTSRPIGS 120 APDTMEQPSS RKAVSICFGS SAATEQLPAF LTPPSTAALH SPASRGNDPQ DRGTYAPQFQ 180 WADASSSLST GNAPVKMEAD DHAGGAGSSS SSITGGGGAL SRTLLPIGQS RCIEYFQFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-16 | 51 | 111 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g25717.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU665426 | 1e-118 | EU665426.1 Triticum aestivum WRKY13 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010237946.1 | 1e-178 | WRKY transcription factor 55 isoform X1 | ||||
TrEMBL | I1INJ4 | 1e-177 | I1INJ4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G25717.1 | 1e-178 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-20 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g25717.1.p |
Entrez Gene | 100822988 |