PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g24798.1.p | ||||||||
Common Name | BRADI_4g24798, LOC100829735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 236aa MW: 26143.3 Da PI: 4.943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.4e-15 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+ eEdell+ ++++G tW+++a+ g++R +k+c++rw +yl Bradi4g24798.1.p 19 KGLWSREEDELLYARITLHGVSTWSSVAQLAGLRRNGKSCRLRWMNYL 66 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.6 | 7.8e-15 | 73 | 116 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++ E+e ++ + k lG++ W+ Ia++m+ gRt++++k++w++y Bradi4g24798.1.p 73 ERISKREEETIISLQKSLGNR-WSVIAARMP-GRTDNEIKNYWNSY 116 677999***************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.024 | 14 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.57E-26 | 18 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.54E-9 | 22 | 66 | No hit | No description |
PROSITE profile | PS51294 | 16.621 | 71 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 8.1E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-22 | 74 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.9E-13 | 75 | 116 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-9 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MADKPGHVVS GEATAKERKG LWSREEDELL YARITLHGVS TWSSVAQLAG LRRNGKSCRL 60 RWMNYLRPDL KKERISKREE ETIISLQKSL GNRWSVIAAR MPGRTDNEIK NYWNSYIRKR 120 RRITGAETHE LAVAMAGEKE QLSAAPPAVP LPPPLTSTMA TTQSTTTHEH NGAGSESEES 180 VVDGGGEELD MDMIGYLLSF DDLELEYPVV AGGDLLMDEW ESQLYSCDNS GSSVD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 19 | 120 | 7 | 107 | B-MYB |
1h8a_C | 2e-23 | 19 | 120 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 121 | RKRRR |
2 | 118 | 122 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g24798.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE650836 | 4e-91 | HE650836.1 Brachypodium sylvaticum genomic construct, BACs 73P1 and 17E7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576277.1 | 1e-173 | transcription factor WER | ||||
TrEMBL | A0A0Q3EPD8 | 1e-172 | A0A0Q3EPD8_BRADI; Uncharacterized protein | ||||
STRING | EMT05414 | 4e-88 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8703 | 25 | 45 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 6e-45 | myb domain protein 86 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g24798.1.p |
Entrez Gene | 100829735 |