PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi4g24666.1.p

Common Name

BRADI_4g24666

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 507aa MW: 59095.8 Da PI: 8.2431

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi4g24666.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.4	4.7e-18	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y++YAk GF v++++s++ +ng+ + t++Cs++gk+e+++k+ +++++ gCkak+++ + dg+++++++ ++HnH+l+p Bradi4g24666.1.p 11 QYYKNYAKAKGFGVTRRSSNRD-DNGQLKYLTLCCSCHGKTESNSKN---MLKPNPTAGLGCKAKVNIVRGPDGTFHLSTVISDHNHTLSP 97 69*************99998.8889************9999...999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-15	11	97	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-34	217	311	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MTFDTENDVR QYYKNYAKAK GFGVTRRSSN RDDNGQLKYL TLCCSCHGKT ESNSKNMLKP 60 NPTAGLGCKA KVNIVRGPDG TFHLSTVISD HNHTLSPHTS RLFRCNKRLN FNVKRRLELN 120 DRAGIRVNKN FNSLVVAADG HENLTFGEKE CRNYLEKTRR LKFGSGDAEA VRDYFMKMQS 180 DNPKFFSLMD VDDESRLKNV FWADARSRAV YDSFDDVITF DTTYLVNKYD MPFASFVGVN 240 HHGQYALLGC ALLSNEDTQT FVWLFQAWLT CTSNRQPRAI VTDQAKAIQN AVEIVFPDAR 300 YRWCLWHIMK KLPEKLGGYE QYEYIKTAIG KSVYDSLTIT DFEGSWMRMR MLVRYDIAGN 360 EWLKGLYDNR HRWVPAFVKD VFWAGISTTQ RSESMHAFFD GYVNVKTTLK HFVSQYENAL 420 HDKVEKEILD DFNSFHSTIP RITHFDIEKQ FQSVYTNSQF KEFQEELTHM LYCDRNFIQK 480 EGAIEIYKIT EDVLIDKDEG WRKDYR*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MTFDTENDVR QYYKNYAKAK GFGVTRRSSN RDDNGQLKYL TLCCSCHGKT ESNSKNMLKP  60
NPTAGLGCKA KVNIVRGPDG TFHLSTVISD HNHTLSPHTS RLFRCNKRLN FNVKRRLELN  120
DRAGIRVNKN FNSLVVAADG HENLTFGEKE CRNYLEKTRR LKFGSGDAEA VRDYFMKMQS  180
DNPKFFSLMD VDDESRLKNV FWADARSRAV YDSFDDVITF DTTYLVNKYD MPFASFVGVN  240
HHGQYALLGC ALLSNEDTQT FVWLFQAWLT CTSNRQPRAI VTDQAKAIQN AVEIVFPDAR  300
YRWCLWHIMK KLPEKLGGYE QYEYIKTAIG KSVYDSLTIT DFEGSWMRMR MLVRYDIAGN  360
EWLKGLYDNR HRWVPAFVKD VFWAGISTTQ RSESMHAFFD GYVNVKTTLK HFVSQYENAL  420
HDKVEKEILD DFNSFHSTIP RITHFDIEKQ FQSVYTNSQF KEFQEELTHM LYCDRNFIQK  480
EGAIEIYKIT EDVLIDKDEG WRKDYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi4g24666.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310379.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0Q3EP55	0.0	A0A0Q3EP55_BRADI; Uncharacterized protein
STRING	BRADI2G36810.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-100	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Bradi4g24666.1.p