PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g24100.1.p
Common NameBRADI_4g24100
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 354aa    MW: 37715.2 Da    PI: 4.2841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g24100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM55.61.7e-17181585127
               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvka.eekewyfFskrdkkyatgkrknr.atksgyWk.atgkd 89 
                        +F+Ptd++lv++yL +k+ g + + e++i e+d   + Pw+  +     ++++ +  e +fF +   ++++  r  r +   g+W+ ++g d
  Bradi4g24100.1.p  18 HKFDPTDDDLVTHYLLPKALGLPGPHEHAIIEADPGGLPPWEVLErhgidMFASgGAYEAFFFGPVPDAAHNAGRMVRrVKGGGFWQgQSGVD 110
                       69*********************988899*************963356663333244599****9988888866665538889****778999 PP

               NAM  90 kevlsk....kgelvglk.ktLvfy.....kgrapkgektdWvmheyr 127
                        +v+      ++ +v  k   L+fy     k+++++g+++  vmhe+ 
  Bradi4g24100.1.p 111 GAVVLLrgdgSEVDVRFKvSNLTFYeskskKNKNEEGSSSGFVMHEFV 158
                       999887665433335555368****887766799999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-227174IPR003441NAC domain
PROSITE profilePS5100521.73914175IPR003441NAC domain
PfamPF023658.8E-1216158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAAASCGFN QPGLYPEHKF DPTDDDLVTH YLLPKALGLP GPHEHAIIEA DPGGLPPWEV  60
LERHGIDMFA SGGAYEAFFF GPVPDAAHNA GRMVRRVKGG GFWQGQSGVD GAVVLLRGDG  120
SEVDVRFKVS NLTFYESKSK KNKNEEGSSS GFVMHEFVIV DPPLPGTMLT RIRFDKAREK  180
RAAKLARESA ADDDGCPEES VRAGKQLVAD GGGDALFNAG YGGGYYGAPL GVVFPGSGEF  240
SDYTQLEQST SYFPDLDTQL EQNTGYTQAE YDEFLLFQQY QMEQQQCWQT GDPSNGGDGF  300
SGGGDGFSGV EQQQQQQQQQ AGGVFCGGYG VGSDHGSDVG TDSTISHCGD GTQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g24100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229803.11e-132NAC transcription factor NAM-B1
TrEMBLI1IN180.0I1IN18_BRADI; Uncharacterized protein
STRINGBRADI4G24100.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1861527
Representative plantOGRP1194335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-09NAC domain containing protein 25