PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g24060.1.p
Common NameBRADI_4g24060, LOC104585050
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 305aa    MW: 32526.6 Da    PI: 4.1758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g24060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.42.4e-18171515128
               NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr.atksgyWk.atgkdk 90 
                       ++F+Ptde+lv +yL +++ g +++ ++++ ++d   + Pw+  +     ++++  ++ +fF ++    ++g r  r +   g+W+ ++g+d 
  Bradi4g24060.1.p  17 YKFDPTDEDLVIHYLLPRALGLPFPYSHAVIDADPGGLPPWQVLErhgidMFSGAADQAFFFGPAPDPDHNGGRMVRiVEGGGFWQgQKGEDG 109
                       79************************999*************96335665555566799******************666699***5556666 PP

               NAM  91 evlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+        + e++  +  L+fy+g++++  +t  vmhe+++
  Bradi4g24060.1.p 110 VVVFLrpgdgaELEVTFNRYNLTFYDGKSER--STGFVMHEFEI 151
                       555446887655566999*******999988..8********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-2210159IPR003441NAC domain
PROSITE profilePS5100523.53913167IPR003441NAC domain
PfamPF023653.9E-1315151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MEAARYGFAT PGGSPLYKFD PTDEDLVIHY LLPRALGLPF PYSHAVIDAD PGGLPPWQVL  60
ERHGIDMFSG AADQAFFFGP APDPDHNGGR MVRIVEGGGF WQGQKGEDGV VVFLRPGDGA  120
ELEVTFNRYN LTFYDGKSER STGFVMHEFE IVDPPHLNAM LTRVKFDKAR ERMAGKLAQE  180
AAAAADGGGE EGDYCVDPLE AVFPRPGEFA GGGYTQAVLD NFYEKKEYEH FLLFQQYEME  240
QQSWQAGDPS NGGEGSSGGG GEEEQQQEAG GVFCGGGYDG GSDHGSDVGT GGSTISHCGD  300
SAGA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g24060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010239269.10.0NAC transcription factor NAM-B1
TrEMBLI1IN140.0I1IN14_BRADI; Uncharacterized protein
STRINGBRADI4G24060.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1861527
Representative plantOGRP1194335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-12NAC domain containing protein 41