PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g23967.1.p | ||||||||
Common Name | BRADI_4g23967, LOC100835967 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 29031.7 Da PI: 8.2845 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++k +G g+W++ ++ g+ R++k+c++rw +yl Bradi4g23967.1.p 14 KGAWTKEEDGRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.1e-19 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++++lG++ W++Ia +++ gRt++++k++w+++ Bradi4g23967.1.p 67 RGNFTEEEDELIIKLHQLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.435 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.26E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.15E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 29.198 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-29 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-14 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDGRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHQLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLARG 120 VDPHTHRPLN AAAANAMPPH QQQLQPHFAA AGHNHQQDHP PACSSGSGSD EDDEPSGSAT 180 PPPSRHAGLG IDLNLSISLA PYQPTSQEPD RPAAAVCLCL NRLGLFQDDA GGKGCICGAA 240 EQQQQASAQR QHMFRFIAPL EQGGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g23967.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063027 | 1e-134 | AK063027.1 Oryza sativa Japonica Group cDNA clone:001-110-B12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576234.1 | 0.0 | transcription factor MYB8 | ||||
Swissprot | P81393 | 1e-90 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | I1IN05 | 0.0 | I1IN05_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G23967.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-88 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g23967.1.p |
Entrez Gene | 100835967 |
Publications ? help Back to Top | |||
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