PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g23640.1.p
Common NameBRADI_4g23640, LOC100828131
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 367aa    MW: 39394.8 Da    PI: 6.3182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g23640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49211531128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvka....eekewyfFskrdkkyatgkrknratksgyW 83 
                       lppGfrFhPtdeelv++yL++k+ g +l +  vi+evd+yk+ePw+Lp+      +  +    e kewyfFs+rd+ky++g+r+nra+ +gyW
  Bradi4g23640.1.p  21 LPPGFRFHPTDEELVNYYLCRKCGGLPLAA-PVIAEVDLYKFEPWRLPEksaaamA--GaggdEAKEWYFFSPRDRKYPNGSRPNRAAGTGYW 110
                       79*************************999.89**************953666541..14544667*************************** PP

               NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       katg dk+v s   + v +kk Lvfy g+ pkg+kt+W+mheyrl
  Bradi4g23640.1.p 111 KATGADKPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 153
                       *********99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5815184IPR003441NAC domain
PROSITE profilePS5100558.21621184IPR003441NAC domain
PfamPF023656.5E-2622153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDYYHSGGSS DQSSSSPSLS LPPGFRFHPT DEELVNYYLC RKCGGLPLAA PVIAEVDLYK  60
FEPWRLPEKS AAAMAGAGGD EAKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPVG  120
SPRPVAIKKA LVFYAGKPPK GVKTNWIMHE YRLADVDRSA AARKKNNHNA LRLDDWVLCR  180
IYNKKGVIER YDTADSSVSD SGDVKPAGPA PGAKKNPRAV PPAMKVELSD YGFYGGGNHP  240
SPPATEMLCF ERGASAAADR DSNSNHSMPR LHTDSSSSDR ALSSPSQLSL SPEFPSDMDY  300
AESQHINAAG GGDAGGWLGE DWAGAIDDDG FAMDGSLVFD PPLSPGAFAR DAAAFGDMLA  360
YLQKPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-7281902174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g23640.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577759.10.0NAC domain-containing protein 71
SwissprotQ53NF71e-144NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLI1IMW90.0I1IMW9_BRADI; Uncharacterized protein
STRINGBRADI4G23640.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-89NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]