PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g23270.1.p
Common NameBRADI_4g23270, LOC100822154
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 583aa    MW: 65242.7 Da    PI: 9.0028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g23270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.39e-1680168298
                       EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       f v++p  +++  rl++p +f  ++  +++++  +++l+ +sg+ W  +l      ++ ++++GWkeFv+++ +++g f++F++dgrs+f   
  Bradi4g23270.1.p  80 FRVFLPQQYGE--RLRIPLSFN-QYlRNQPAG--MVSLKGQSGNIWLAEL--AVDTEGLFFANGWKEFVRDHSIETGHFLTFRYDGRSKF--S 163
                       55665555554..69******8.664666666..8***************..999999****************************9999..6 PP

                       EEEE- CS
                B3  94 vkvfr 98 
                       v vf+
  Bradi4g23270.1.p 164 VVVFD 168
                       66665 PP
2B345.31.6e-14477567498
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +++ s+v     + lp  f++++   ++ +k+l+l d++g+sW+v++ y   +    +++GW++F   n+L+  D++vF+l+++++   +v++
  Bradi4g23270.1.p 477 IMKESYVYVGFFMNLPCGFVRDCL--PRANKKLKLWDPQGKSWDVNYVYYSARAVGAFSGGWSKFSLGNNLEKFDICVFELISKDDI--KVHI 565
                       6788999999999*********95..345679***************887777777899**********************986655..7777 PP

                       E- CS
                B3  97 fr 98 
                       +r
  Bradi4g23270.1.p 566 YR 567
                       66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.60677170IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1977170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1978170IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-1479170IPR003340B3 DNA binding domain
CDDcd100171.44E-1679168No hitNo description
PfamPF023623.9E-1481168IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-23466567IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-22467567IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-13474569IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464474569IPR003340B3 DNA binding domain
CDDcd100177.25E-21476567No hitNo description
PfamPF023622.2E-12476567IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0034613Biological Processcellular protein localization
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MARRQEQGSR RREQQERERR RREELEREES TAAGEKEKEK EKEKEESTVA AAMVATEKEN  60
GEDKEKEKEG EEEKFGQQFF RVFLPQQYGE RLRIPLSFNQ YLRNQPAGMV SLKGQSGNIW  120
LAELAVDTEG LFFANGWKEF VRDHSIETGH FLTFRYDGRS KFSVVVFDGK CIEKPSAFHA  180
RPCKDLIVKL ENGEGDMGMN ATDPSQILVS PLGGSNENTR ERVSEMDANG TILQRCSSVL  240
EKGKKISPGV LVGTNKTAST SLNKDMSVSD QSESVPNEES IGTTRKRIRE MDANGSTSEK  300
CSKVSEMVMK KGPEASVVNN EASTSLNMDM NAAGPAESLL ATPEDSNGTT RKRVKEINVN  360
DSTFKKCSSA SVKGKEKCPV ASVGTYKSTT TSRNSTEESD SESSMLEQSI SSIKAEISSP  420
MRLRKNKDVP KCGKYIATGQ RQLLVISQRP PVTEEQKNHA LQRAKKFKSK NPFALQIMKE  480
SYVYVGFFMN LPCGFVRDCL PRANKKLKLW DPQGKSWDVN YVYYSARAVG AFSGGWSKFS  540
LGNNLEKFDI CVFELISKDD IKVHIYRVVP EITPFLPGTN RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A4e-1645256827142B3 domain-containing transcription factor VRN1
4i1k_B4e-1645256827142B3 domain-containing transcription factor VRN1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722ERRRRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00192DAPTransfer from AT1G49480Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g23270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576206.10.0B3 domain-containing protein Os11g0197600 isoform X1
SwissprotQ2R9D22e-85Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLI1IMS60.0I1IMS6_BRADI; Uncharacterized protein
STRINGBRADI4G23270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-17related to vernalization1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]