PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g22681.1.p | ||||||||
Common Name | BRADI_4g22681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 192aa MW: 21770.5 Da PI: 9.5786 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 111.1 | 1.3e-34 | 17 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp Gf+F+P+d++l+ eyL ++ +++l+ vi e+di+ + PwdL ++ ke yf ++rd ky g+r nr+t++gyWka ++ +++ Bradi4g22681.1.p 17 LPSGFKFRPSDKDLILEYLYRRSIDEPLPW-AVIVEADIMGSSPWDLL---PEGAKEKYFLTRRDLKYMDGSRINRITQEGYWKARRTESPIY 105 699**************************9.89**************4...457899************************************ PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ lvg++++L fy +pkg +t W m eyrl Bradi4g22681.1.p 106 V-HNILVGMRRSLLFY-VGTPKGMRTIWAMREYRL 138 *.999***********.678999**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.01E-36 | 14 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.359 | 17 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-17 | 18 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MAANVPVPMA DGSVLMLPSG FKFRPSDKDL ILEYLYRRSI DEPLPWAVIV EADIMGSSPW 60 DLLPEGAKEK YFLTRRDLKY MDGSRINRIT QEGYWKARRT ESPIYVHNIL VGMRRSLLFY 120 VGTPKGMRTI WAMREYRLAG AGLSPCMVMR PTGSETFGRT CQIDATATAK RCRRGEVELD 180 NMILQVPFVI V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-30 | 15 | 138 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g22681.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024310365.1 | 1e-117 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A0Q3HL81 | 1e-139 | A0A0Q3HL81_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G22680.1 | 1e-117 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4482 | 23 | 69 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 3e-35 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g22681.1.p |