PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g22637.1.p | ||||||||
Common Name | BRADI_4g22637, LOC100841169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 28484.1 Da PI: 7.959 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.9e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd l+ +v+++G+g+W+++++ g+ R+ k+c++rw +yl Bradi4g22637.1.p 14 KGPWTLEEDIVLASYVQEHGPGNWRSVPASTGLARCSKSCRLRWVNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T++Ed +v++ +lG++ W++Ia++++ +Rt++++k++w+++l Bradi4g22637.1.p 67 RGDFTPQEDSVIVHLQSLLGNR-WAAIASYLP-NRTDNDIKNYWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.034 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.14E-31 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.16E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.936 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.20E-12 | 70 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MGRPPCCDKM GVKKGPWTLE EDIVLASYVQ EHGPGNWRSV PASTGLARCS KSCRLRWVNY 60 LRPGIRRGDF TPQEDSVIVH LQSLLGNRWA AIASYLPNRT DNDIKNYWNT HLRKRLKKLE 120 AMGAIFALPP QPPESTSTRS SSSSSYAYSV DNISRLLHGF MKTSAPPASA PTKSSQSASY 180 ADAKPSTVVH VIEANEYALP PTFDDYSFSG TGAELINFAG VQQQVSLSSI EKWLFDEAVE 240 TKDELNSSDA SYSVPMLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-27 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light) (PubMed:16005291, PubMed:21637967). Promotes guard cell deflation in response to water deficit. Triggers root growth upon osmotic stress (e.g. mannitol containing medium) (PubMed:21637967). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:21637967}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g22637.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonic acid (JA) and salicylic acid (SA) (PubMed:16463103). Triggered by auxin (IAA) in roots (PubMed:9839469, PubMed:21637967). Stimulated by light, UV-light and cold (PubMed:9839469). According to PubMed:16005291 and PubMed:23828545, rapidly repressed by abscisic acid (ABA) in an ABI1-dependent manner. But in contrast, according to PubMed:21637967, transiently induced by ABA in seedlings (PubMed:16005291, PubMed:21637967, PubMed:23828545). Rapidly repressed by drought. Activated by white light, but repressed by blue light and darkness (PubMed:16005291). Transiently induced by salt (NaCl) in seedlings. Induced by sucrose (PubMed:21637967). Positively regulated by SCAP1 (PubMed:23453954). {ECO:0000269|PubMed:16005291, ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:21637967, ECO:0000269|PubMed:23453954, ECO:0000269|PubMed:23828545, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577718.1 | 0.0 | myb-related protein 306 | ||||
Swissprot | Q8GYP5 | 1e-80 | MYB60_ARATH; Transcription factor MYB60 | ||||
TrEMBL | I1IMM7 | 0.0 | I1IMM7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G22637.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 9e-76 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g22637.1.p |
Entrez Gene | 100841169 |
Publications ? help Back to Top | |||
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