PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g22525.1.p
Common NameBRADI_4g22525
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 753aa    MW: 86659.7 Da    PI: 9.0593
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g22525.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.41.3e-1473151290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        Yn Y+ + GF vr  +s+ + r g   +++ vC+++gk+ +e++         a+ rt+C ak+++++++d+ w+v+ +++eHnH l+
  Bradi4g22525.1.p  73 LYNLYSWKQGFGVRHGRSRIN-RFGYRSMHEIVCQCQGKPGKENT---------ASCRTDCPAKIRLHRTEDHGWYVSIFNNEHNHRLS 151
                       7****************9998.667799***********998755.........59*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-1173151IPR004330FAR1 DNA binding domain
PfamPF105514.5E-28274366IPR018289MULE transposase domain
PROSITE profilePS5096610.361527563IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-4528560IPR007527Zinc finger, SWIM-type
SMARTSM005758.2E-4538565IPR006564Zinc finger, PMZ-type
Gene3DG3DSA:4.10.60.105.2E-4541554IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.105.2E-4729750IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MDAERHLGNQ VVGLPCSWTK RGEAIQGPDA RISACTTSTL EHFVKCASDL DGSDVFAPTA  60
GTTFDSRQEA YELYNLYSWK QGFGVRHGRS RINRFGYRSM HEIVCQCQGK PGKENTASCR  120
TDCPAKIRLH RTEDHGWYVS IFNNEHNHRL STSCDEKMHW NSHNEIDPLA RDFVKNLRAN  180
NISLGKIYNI MGSSSYGSGT VPFRKQALRT LCSSIAQETM KEDLPKTVKL LQEMRARDLE  240
MTLVVDIDEN GRIKTMLWCN GRNKRDYKDF GYAITFDTTY KTNLYNMPFG LFVGVNNHFQ  300
SVIFAGVLLR EETTAAFEWI FNNFLSIVDN KHPYTVLTDQ CQVMRTALET AMPNSRHRWC  360
KWHVLKSAKE KLGYVYSEHS EFKREFHELL NAVMSPDEFE CRWAAILDRY KLKNNPYIDR  420
LYENREMWVK PYFLDIFCAS MTSTQRSESA NSMLKQYISR RRMCTSTTPL EADAAQIYTR  480
AMFDTFKEEL YRSGWYVVEE DVYTGNYRLT WAPDSRSNDS EHNQRSFIVQ IEDDGQFVSC  540
TCGLFAHVGM ICRHAIKVLL RNDILRVPQK NILRRWTVHA RHNLESGGAM IQHRRADDER  600
GFRTNVLTMV ASDMVKESNS HPIFYNVAMR GLCKIRDDMK KLKEVVVLPD TNVLQEFDSN  660
LISQVVEPPK RVGSAGRPST VRPRSRMDYI SDVKKKTRAV SSLYKPPGKL GKDDGALMEI  720
VGSERKPLKR IVRCAICKNP GHNRSRCTQR GV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g22525.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151849.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3ERQ50.0A0A0Q3ERQ5_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-76FAR1-related sequence 5