PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g21230.1.p | ||||||||
Common Name | BRADI_4g21230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 215aa MW: 24359.9 Da PI: 10.311 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52.2 | 2e-16 | 88 | 186 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Yn+YA+ Fs++ ++s+k k+ + + sk k+e+++++ +k+rr+++ ++t+Ckak++vk++ dg+wev+ Bradi4g21230.1.p 88 HYNAYARVKCFSIKANTSRKPKNMDDAAG---QSSKVRKKESSSDDepvdanegplasqkVVKRRRRESIKETECKAKMTVKLK-DGRWEVIF 176 6****************999966664443...33444444444444455799******988899999999**************.******** PP FAR1 81 leleHnHela 90 ++ eHnHel Bradi4g21230.1.p 177 FVVEHNHELI 186 ********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-14 | 88 | 186 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MKIRKKKGRK STKKRAGLQY RGGSWKENHV SYAPFVWADE KVVIMQRLNV KPWDLNLEAP 60 LDDGIGGGAE PEPFLGMRFD TLAGAKEHYN AYARVKCFSI KANTSRKPKN MDDAAGQSSK 120 VRKKESSSDD EPVDANEGPL ASQKVVKRRR RESIKETECK AKMTVKLKDG RWEVIFFVVE 180 HNHELITKPS LTKYLLSHKN ISPEEEDFLR ATAI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g21230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312602.1 | 1e-61 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | I1IMA1 | 1e-157 | I1IMA1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G21230.1 | 1e-158 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 7e-11 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g21230.1.p |