PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g21160.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 364aa    MW: 37740.4 Da    PI: 7.9589
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g21160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.46.2e-3299153358
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                        v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +a+kC+ACgCHRnFHR++ +
  Bradi4g21160.1.p  99 MVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEAFKCSACGCHRNFHRKDFD 153
                       689*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.7E-28100151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.6E-29101151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-23101151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.524102151IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.4E-31240310IPR009057Homeodomain-like
SuperFamilySSF466896.39E-20240308IPR009057Homeodomain-like
TIGRFAMsTIGR015653.7E-26250306IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDLSGTTRGE LPIPMNASYG PAAAAGSVVV SGAGHSHAAA AHNGQQQMTA PLMPAAEVAN  60
NNAAAAIGIG GKKRSAAASA GAGAGIRAGN GAGGAPLAMV KYRECLKNHA AAIGGNATDG  120
CGEFMPSGEE GSLEAFKCSA CGCHRNFHRK DFDDDLALHR RLLLGPHHLI PRGPIVPSSG  180
AGDHYGVGGG AAYARAALPP PQHPHQIVMP LNMIHSSESD EIMEGGHGIG GAVLSRSLGH  240
GGGGASSSQQ KRFRTKFTPE QKARMLAFAE RVGWRLQRAD DTAVQRFCQE VGVKRRVLKV  300
WMHNNKHNLA SNKLPIPSTP NSPQAEAQAQ DQDQPPMAPA PVNSMPPPPE QEPGQDDQQL  360
DLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A7e-262503121779ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g21160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726558e-41EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
GenBankEU9747758e-41EU974775.1 Zea mays clone 457946 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576116.20.0zinc-finger homeodomain protein 4
RefseqXP_014757654.10.0zinc-finger homeodomain protein 4
RefseqXP_014757655.10.0zinc-finger homeodomain protein 4
SwissprotQ53N875e-73ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A0Q3IRE50.0A0A0Q3IRE5_BRADI; Uncharacterized protein
STRINGBRADI4G21160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-61homeobox protein 31