PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g19577.2.p
Common NameBRADI_4g19577, LOC100827096
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 407aa    MW: 42885.4 Da    PI: 6.8414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g19577.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-10237284455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  Bradi4g19577.2.p 237 SHSLAERVRREKISERMKLLQDLVPSC----NKVTGKAVMLDEIINYVQSLQ 284
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-17231302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-11231288No hitNo description
Gene3DG3DSA:4.10.280.101.6E-17233301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663233283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-7237284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-11239289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAHDGFLRSF HGLPWPPAVN GATPSFDVAQ HALTGWEQQQ HDAGSLAYNS ALSSLVSSPS  60
SMAAAAAAEA AASSSPHGAA AVLMMDELVS RLGVCGGLAI PSPSPQPPSC YSTPLGSPSK  120
PATPLPAGKK KQLSRAASSQ SLLGNGEYRK RKAPGAKAKG AIATKSPEPE TRAKKCKLST  180
AAETGAQEAE ELAIIMPVPA VSGELGGNGK GKEKEVAEDP HKDYIHVRAR RGQATDSHSL  240
AERVRREKIS ERMKLLQDLV PSCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLSTVNPQ  300
MEFDVDNFLP KDDNEPCSLP ATAYTAAEGA NPAAFCYPPS PEAGKATMQQ SALAICSKGF  360
EVPSLFVTHG TIPASSSHQE LIQNACNLWE DDDLQSVVQM GFRGNT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi4g19577.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576061.30.0transcription factor bHLH62
TrEMBLA0A0Q3ELZ60.0A0A0Q3ELZ6_BRADI; Uncharacterized protein
STRINGBRADI4G19577.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.13e-52bHLH family protein