PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g19060.1.p | ||||||||
Common Name | BRADI_4g19060, LOC100846649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 209aa MW: 23187.2 Da PI: 9.0512 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.1e-33 | 116 | 174 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ Bradi4g19060.1.p 116 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 174 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-34 | 101 | 174 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-30 | 108 | 175 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.113 | 111 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 116 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-27 | 117 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MENYSNLFST QPSSSTSNSY HFMGTSAAAS SHDRHHHGQP CNSGGSLSHG LFSNSKQQQD 60 GGDEGARSSP HGRGESSAGP DGTGGEADVV VEKKKGEKKE RRPRYAFQTR SQVDILDDGY 120 RWRKYGQKAV KNNNFPRSYY RCTHQGCNVK KQVQRLSRDE GVVVTTYEGT HTHPIEKSND 180 NFEHILTQMQ VYSGLNNVPT AFSNHMFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 107 | 175 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 107 | 175 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g19060.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF368363 | 1e-117 | EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577566.1 | 1e-156 | probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 2e-55 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | I1ILR4 | 1e-155 | I1ILR4_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G19060.1 | 1e-156 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-56 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g19060.1.p |
Entrez Gene | 100846649 |