PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi4g18830.1.p | ||||||||
Common Name | BRADI_4g18830, LOC100842487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 305aa MW: 34801.1 Da PI: 7.8231 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 112 | 134 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L Hi+ H Bradi4g18830.1.p 112 SCSVCSRVYPTSRLLSIHISEaH 134 6******************9888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 11 | 84 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5 | 111 | 134 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 113 | 134 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 5.1 | 149 | 174 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 151 | 174 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MQQKPAEAME VCARGDDGET EAPKALGTSL GFWAGTRRRL APDDPFFAAG DMERELLAKH 60 VALDLSDDDR YQLEKMDVAS VSTVCCPIAG CGAHLDCLED FEDHYSTRHT ASCSVCSRVY 120 PTSRLLSIHI SEAHDSFFEA KVAHGFPMYE CLVEGCVVKL KTYKSRQQHL IDKHQFPKSF 180 EFFKKAQPSQ RHRQKYHWRY KGEETRDTLM DVDGKSPRQT KWRYRPKQHD HKESIENKHH 240 HKEAKDNDME VEQKMDELTS AVSKLSTADS TPSSITFGHR RSRGLTFVPR SIKQNKQVSQ 300 PEAK* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi4g18830.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003577552.1 | 0.0 | zinc finger protein 511 | ||||
TrEMBL | I1ILN3 | 0.0 | I1ILN3_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G18830.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10911 | 26 | 29 | Representative plant | OGRP7538 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14140.1 | 9e-93 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi4g18830.1.p |
Entrez Gene | 100842487 |