PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi4g17441.1.p | ||||||||
Common Name | BRADI_4g17441 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 249aa MW: 29264.5 Da PI: 9.4221 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.3 | 3e-19 | 54 | 145 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 Y +YA+ F vr+++++ ++ge+ +++fvC+k gk+++ k++ + +r+++ ++rtgC+a++kvk++ +++ ++++e+eHnH+ Bradi4g17441.1.p 54 HYVDYARWNRFGVRVDYQRPI-KSGETSRAQFVCYKAGKNKKGKEDtqrpesVVPKRKRNITERTGCQARMKVKLD-GATYIMEHFEEEHNHH 144 69**************99887.7888****************9999999998889999******************.9**************8 PP FAR1 89 l 89 + Bradi4g17441.1.p 145 V 145 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-15 | 54 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MCMPIFIYID NMNSAVPDTV ESNEDDDDGD DGISAPKKPA VGMRFDNIEA AKQHYVDYAR 60 WNRFGVRVDY QRPIKSGETS RAQFVCYKAG KNKKGKEDTQ RPESVVPKRK RNITERTGCQ 120 ARMKVKLDGA TYIMEHFEEE HNHHVLKKFN LARYLRSHRH MPREEKEFVK LLHGCNLRTS 180 QMMHILSTLH GKLEDLSYRR TDMANFRVAL RREHCVMDLK FTLQYFNKLK KEDDDFFYSF 240 ELAMKIGR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi4g17441.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312803.1 | 1e-122 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K2CNI2 | 0.0 | A0A2K2CNI2_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G35320.1 | 1e-116 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9528 | 8 | 43 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-17 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi4g17441.1.p |